CX676581

Overview
NameCX676581
Unique NameCX676581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1118 contig Csv1_Contig1118:57..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 5.305e-90
Identity = 159/234 (67.95%), Postives = 193/234 (82.48%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 160/234 (68.38%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALRE FYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREGFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAGIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 328.561 bits (841), Expect = 2.016e-89
Identity = 158/234 (67.52%), Postives = 193/234 (82.48%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL +Y++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.445e-87
Identity = 155/235 (65.96%), Postives = 198/235 (84.26%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGA-YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESE--YSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            +GS ISLFIATN+CESI+WK+FSPTTIN+GRG EFEGA++ALF L+ITK +KV AL+EAFYRQNLPN+TNLLATVLVF++VVYFQGF+V LP+    ++G  G  YPIKLFYTSNMPIILQ+ALVSNLYFISQ+LY++Y  N  +++LG+W+E E   SG   PVGG+AYY++   S A++ ++P HAL Y++F+L +CALFSKTWI+VSG+SA DV+KQL++QQMVM G R S+
Sbjct:  179 IGSAISLFIATNVCESIVWKSFSPTTINTGRGTEFEGALVALFQLMITKTDKVRALQEAFYRQNLPNVTNLLATVLVFVLVVYFQGFQVELPITPAKSKGMAGQFYPIKLFYTSNMPIILQTALVSNLYFISQILYKRYPENIIIHILGRWEEPEMSVSGQMRPVGGIAYYISPLNSFAEIVSDPVHALLYIIFILASCALFSKTWIQVSGTSASDVSKQLRDQQMVMKGFRASS 413          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.012e-85
Identity = 157/234 (67.09%), Postives = 187/234 (79.91%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WK+FSP T+N+GRG EFEGAVIALFHLL T+ +KV ALREAFYR NLPN+ NL AT+LVF IV+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVS LY ISQ+L  ++ GNFF+ LLG W++ E  G   S PV  L YY++ P S   M  +P H L Y+ FML +CA FSKTWIEVSGS+A+DVAKQLKEQQMVM GHR+ +
Sbjct:  175 LGSGISLFIATNICETIVWKSFSPATVNTGRGTEFEGAVIALFHLLATRSDKVRALREAFYRPNLPNLMNLSATILVFGIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSGLYVISQMLAIRFRGNFFIGLLGVWEDVEGGGPARSYPV-ALCYYLSPPESFFSMFLDPIHGLLYITFMLGSCAFFSKTWIEVSGSAAKDVAKQLKEQQMVMRGHREKS 407          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.809e-83
Identity = 149/232 (64.22%), Postives = 182/232 (78.45%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICESI+WKAFSPT+IN+GRG E+EGAVIALFHLL+T  NK  AL EAFYRQNLPNI NLLAT++VF  V+Y QGF+V +PV+S   RG +G+YPI+LFYTSNMPI+LQSAL SN++ ISQ+LY ++S N  V L G W+  E +     V GL YY++ P +  D   +P H   Y+ +MLTACA+FSKTWIEVSGSS RDVAKQLK+Q +VM GHR+ +
Sbjct:  177 LGSGISLFIATNICESIMWKAFSPTSINTGRGPEYEGAVIALFHLLMTWDNKQRALYEAFYRQNLPNIMNLLATLVVFAAVIYLQGFRVEIPVKSSRQRGARGSYPIRLFYTSNMPIMLQSALSSNVFLISQMLYSRFSENLLVRLFGVWEAKEGTAQLSAVSGLVYYMSPPLNFKDALLDPIHTAVYIAYMLTACAVFSKTWIEVSGSSPRDVAKQLKDQGLVMAGHREQS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.222e-75
Identity = 130/232 (56.03%), Postives = 174/232 (75.00%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLF ATN+CE + WKAF+PTT N G+G EFEGAV+ALFHLL ++++K  AL EAFYR +LPN+  L+ATV VFL+VVY QGF++ LP++S   RG  G YPI+LFYTSN+PI+LQSAL SN++ ISQ+L+ ++  N FV +LG W   + +     V GLAYY+  P S  +   +P   + Y++F+L +CA+FS TWIE+SG+S RDVAKQ KEQ +V+ GHRD++
Sbjct:  177 LGSGISLFTATNVCEQVFWKAFAPTTSNIGKGTEFEGAVVALFHLLGSRKDKKRALLEAFYRSHLPNMFQLIATVFVFLLVVYLQGFRIELPIKSTRQRGPYGLYPIRLFYTSNIPIMLQSALSSNIFIISQMLFVRWPNNIFVKILGSWDTRQGAAQLYAVSGLAYYIQPPLSFTEALLDPIKTIIYIIFVLGSCAVFSTTWIEISGASPRDVAKQFKEQGLVIAGHRDTS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.832e-74
Identity = 136/232 (58.62%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLF+ATNICE I WKAF+PTT+N+GRG EFEGAV+ALFHLL  +++K  AL EAFYRQNLPNI  LLAT +VF +VVY QGF+  +PVRS   RGQ G YPIKLFYTSN PI+LQSAL SN + ISQ+L++++  N  V L G W     S       GLAYY+  P SL +   +P   + Y+ F+L+ CALFSKTWIE+SG++ RDVAKQ K+Q +V+ G R+++
Sbjct:  177 LGSGISLFMATNICEQIFWKAFAPTTVNNGRGDEFEGAVVALFHLLSVRKDKRRALVEAFYRQNLPNIFQLLATFIVFFLVVYLQGFRYEIPVRSTRQRGQNGLYPIKLFYTSNTPIMLQSALTSNFFIISQMLFQRFPLNPVVRLFGVWDARPGSAQLFASNGLAYYIQPPLSLTEALLDPIKTVIYVSFVLSVCALFSKTWIEISGTAPRDVAKQFKDQGLVIAGRRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.005e-72
Identity = 134/234 (57.26%), Postives = 174/234 (74.36%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKW--KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLF ATNI E I WKAF+PTT+N GRG EFEGAVIALFHLL  +++K  AL EAFYR+NLPN+  + +T+ VFL V+Y QGF+  LP++S   RGQ G+YPIKLFYTSN PI+LQSAL SN++ ISQ+LY+++S N  V LLG W  +    +G  + + GL+YY+  P S+ D   +P   + Y+ F+L ACALFSKTWIE+SG+S RDVAKQ K+Q + + G R++N
Sbjct:  176 LGSGISLFTATNIAEQITWKAFAPTTVNVGRGQEFEGAVIALFHLLAIRKDKKRALVEAFYRENLPNMFQVFSTIGVFLSVLYLQGFRYELPIKSTRTRGQYGSYPIKLFYTSNTPIMLQSALTSNIFLISQILYQRFSTNPLVKLLGVWGTRAGAPAGQQVALSGLSYYIQPPFSVTDALLDPIKTVVYVGFVLGACALFSKTWIEISGTSPRDVAKQFKDQGLTINGKRETN 409          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.313e-72
Identity = 129/232 (55.60%), Postives = 170/232 (73.28%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE I WKAF+PTT+N GRG EFEGA++A  HLL T+++K  A+ EAF RQ+LPN++ L+ TV +F  V+Y QGF+V +PV+S   RG  G +PIKLFYTSN+PI+LQSAL SN++ ISQ+L++K+  N  V LLG W   E      PV G+AYY+  P +  +  A+P   + Y+ F+L  CA+FS TWIE+SGSS RDVAKQ KEQ +V+ G R+++
Sbjct:  177 LGSGISLFIATNICEQIFWKAFAPTTVNKGRGYEFEGAIVAFVHLLFTRKDKKRAIIEAFTRQDLPNMSQLVTTVAIFAAVIYLQGFRVDIPVKSSKQRGPYGVFPIKLFYTSNLPIMLQSALTSNIFIISQMLFKKFPTNVLVRLLGVWDGREGMQQLFPVSGIAYYMQPPFNAKEALADPVKTVIYIAFVLGVCAVFSATWIEISGSSPRDVAKQFKEQGLVIAGRRETS 408          
The following BLAST results are available for this feature:
BLAST of CX676581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A1_BOVIN5.305e-9067.95Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HEMAM1.182e-8968.38Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A1_CANFA2.016e-8967.52Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PYRSA1.445e-8765.96Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_HALRO3.012e-8567.09Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_NEUCR4.809e-8364.22Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_DEBHA8.222e-7556.03Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_HANAN1.832e-7458.62Protein transport protein SEC61 subunit alpha OS=H... [more]
SC61A_KLULA1.005e-7257.26Protein transport protein SEC61 subunit alpha OS=K... [more]
SC61A_YARLI1.313e-7255.60Protein transport protein SEC61 subunit alpha OS=Y... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H02-O4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676581 ID=CX676581; Name=CX676581; organism=Citrus sinensis; type=EST; length=696bp
TTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATTTGTGAAAGCAT
TATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCGGGGAGCTG
AATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACCAAGCAA
AACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCTTCCCAA
TATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTGTCTACT
TTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCCCGTGGG
CAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTAT
CATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGC
TCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGG
AAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTA
TTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTCC
ATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTCG
AAGACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGCCAAGCA
GCTTAAGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCAAAT
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