CX676576

Overview
NameCX676576
Unique NameCX676576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.700e-47
Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.220e-47
Identity = 82/149 (55.03%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFI 166          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 2
Query:  323 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            GLK  S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+
Sbjct:   32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFI 176          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 2
Query:  311 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            S + GLK T++     K S A   W  KT SNG + RCM+ W P  N KFE LSYLP+L+++ + KE++Y+L+  W+PCLEFD  G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ++NE++EC KAYP A+IR + F+N +Q QC+SF+
Sbjct:   14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 84/151 (55.63%), Postives = 113/151 (74.83%), Query Frame = 2
Query:  311 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + + GLK  +   +  K  +  +S   SNG +  CM  W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 82/149 (55.03%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.787e-47
Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.946e-47
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK +S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+
Sbjct:   30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFI 176          
The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
RBS1_SOLLC1.700e-4755.03Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_FLATR2.220e-4755.03Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY2.900e-4757.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.900e-4752.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN2.900e-4755.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FLAPR2.900e-4755.03Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3B_SOLLC2.900e-4756.38Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC2.900e-4756.38Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_FLAPR3.787e-4755.03Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MALSP4.946e-4756.38Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bp
GGGTGGTGATGAAACCAAAGCCAAAGTGCTTCTGTAAACACTCCACTTTC
CTTATACAAATCCTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTA
ACAAACCATACATCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTT
TACTTGAACGGTTTCCATTGCCTTGAGAACTAAAATAATTAATTATTACT
CTTTTGCTATCTCGGTCTTAAGTGTTGCCTCTCTCTTTTAACTATCTTGT
TTCTTGAAACAGTGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCC
AGTTGCTGGTTCTGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGC
TTCCAGTTAAGGATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGT
TCAAAAACTCGATGCATGAAGACATGGAATCCAATCAATAACAAAAAGTT
TGAGGCCCTCTCCTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGG
AGATTGACTACATGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGAT
GAGGTGGGATATGTGCACAGGGAGAATAGCAAAATGCCAGGGTATTATGA
TGGGAGGTATTGGACAATGTGGAAGTTGCCAATGTTTGGATGCAATGATT
CATCTCAAATCCTGAATGAAATACAAGAGTGCAAAAAAGCATACCCAAAT
GCTTATATTCGCTGCTTGGCATTTAACAATCAGAAACAGGGTCAGTGCAT
GTCCTTTCTCAT
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