CX676576
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.700e-47 Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK + + K++ + SNG + RCM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+ Sbjct: 26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 174
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.220e-47 Identity = 82/149 (55.03%), Postives = 110/149 (73.83%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+ Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFI 166
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 2 Query: 323 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 GLK S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+ Sbjct: 32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFI 176
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 2 Query: 311 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 S + GLK T++ K S A W KT SNG + RCM+ W P N KFE LSYLP+L+++ + KE++Y+L+ W+PCLEFD G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ++NE++EC KAYP A+IR + F+N +Q QC+SF+ Sbjct: 14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 84/151 (55.63%), Postives = 113/151 (74.83%), Query Frame = 2 Query: 311 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + + GLK + + K + +S SNG + CM W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+IR + F+N +Q QC+SF+ Sbjct: 24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 82/149 (55.03%), Postives = 112/149 (75.17%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK S A PV + S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+ Sbjct: 20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+ Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47 Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK T+ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+ Sbjct: 26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.787e-47 Identity = 82/149 (55.03%), Postives = 111/149 (74.50%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+ Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 4.946e-47 Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK +S + PV + SNG + +CM+ W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+ Sbjct: 30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFI 176 The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 144
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bpback to top |