CX676576

Overview
NameCX676576
Unique NameCX676576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5590 contig Csv1_Contig5590:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 81/149 (54.36%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S   +  K S   S+   SNG K +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFI 177          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 80/149 (53.69%), Postives = 109/149 (73.15%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            SNG + +CM+ W P+  KKFE LSYLP L+   +AKE+DY+L+  WIPCLEF+ E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC+SF+
Sbjct:   52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFI 175          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 80/149 (53.69%), Postives = 109/149 (73.15%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  +   +  K ++  +S   SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 78/148 (52.70%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            ++GLK  S A    + ++   S   SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   28 FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 77/149 (51.68%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK ++   +  K+++  ++   SN  K +CMK W P+  +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD   G+V+REN + PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK YP+A+IR + F+N +Q QC+SF+
Sbjct:   28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFI 175          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 84/162 (51.85%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  278 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            ++++ +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E   AYP A++R + F+N +Q QC+SF+
Sbjct:   16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 84/170 (49.41%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  275 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            M +S+ TA  A          ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC  ++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+
Sbjct:    7 MLSSVATAACAAPAQASMVAPFVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 79/147 (53.74%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  323 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            GLK  S A  PV       +   +NG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 77/149 (51.68%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S A  PV       +   SNGS+  CM+ W P+  KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ +  PGYYDGRYWTMW+LP+FG  D++Q+L E+ ECK  YP A+IR + F+N +Q QC+SF+
Sbjct:   25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFI 171          
The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
RBS6_MESCR1.347e-4454.36Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_FRIAG1.347e-4453.69Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_GOSHI1.759e-4460.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY1.759e-4453.69Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS2_FRIAG1.759e-4452.70Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_CUCSA3.001e-4451.68Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_PEA3.001e-4451.85Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS5_FRIAG3.919e-4449.41Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_MESCR3.919e-4453.74Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TRIRP5.118e-4451.68Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bp
GGGTGGTGATGAAACCAAAGCCAAAGTGCTTCTGTAAACACTCCACTTTC
CTTATACAAATCCTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTA
ACAAACCATACATCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTT
TACTTGAACGGTTTCCATTGCCTTGAGAACTAAAATAATTAATTATTACT
CTTTTGCTATCTCGGTCTTAAGTGTTGCCTCTCTCTTTTAACTATCTTGT
TTCTTGAAACAGTGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCC
AGTTGCTGGTTCTGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGC
TTCCAGTTAAGGATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGT
TCAAAAACTCGATGCATGAAGACATGGAATCCAATCAATAACAAAAAGTT
TGAGGCCCTCTCCTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGG
AGATTGACTACATGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGAT
GAGGTGGGATATGTGCACAGGGAGAATAGCAAAATGCCAGGGTATTATGA
TGGGAGGTATTGGACAATGTGGAAGTTGCCAATGTTTGGATGCAATGATT
CATCTCAAATCCTGAATGAAATACAAGAGTGCAAAAAAGCATACCCAAAT
GCTTATATTCGCTGCTTGGCATTTAACAATCAGAAACAGGGTCAGTGCAT
GTCCTTTCTCAT
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