CX676576

Overview
NameCX676576
Unique NameCX676576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5590 contig Csv1_Contig5590:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 79/150 (52.67%), Postives = 111/150 (74.00%), Query Frame = 2
Query:  317 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S A  PV K +    +   SNG +  CM+ W P+  KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG  DSSQ+L E+ +CK  YP+++IR + F+N +Q QC+SF+
Sbjct:   26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 79/147 (53.74%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  323 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+
Sbjct:   50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44
Identity = 84/157 (53.50%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  293 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E   AYP A++R + F+N +Q QC+SF+
Sbjct:   21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44
Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            SNG K  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+
Sbjct:   50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+ R + F+N +Q QC+SF+
Sbjct:   25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFI 171          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 84/168 (50.00%), Postives = 116/168 (69.05%), Query Frame = 2
Query:  278 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            +A   TA  AG+       + GLK  +   +  K S  +SS   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++E KKAYP+A+IR + F+N++Q QC+SF+
Sbjct:    9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFI 175          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 73/128 (57.03%), Postives = 98/128 (76.56%), Query Frame = 2
Query:  380 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF+
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172          
The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
RBS_MEDSA5.118e-4452.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR5.118e-4453.74Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_PETHY5.118e-4460.48Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS2_PEA6.685e-4453.50Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS2_LEMGI6.685e-4458.54Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS2_MESCR8.731e-4452.35Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_AMAHP8.731e-4450.00Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_MESCR1.140e-4357.03Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_LEMGI1.489e-4357.72Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.489e-4357.72Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bp
GGGTGGTGATGAAACCAAAGCCAAAGTGCTTCTGTAAACACTCCACTTTC
CTTATACAAATCCTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTA
ACAAACCATACATCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTT
TACTTGAACGGTTTCCATTGCCTTGAGAACTAAAATAATTAATTATTACT
CTTTTGCTATCTCGGTCTTAAGTGTTGCCTCTCTCTTTTAACTATCTTGT
TTCTTGAAACAGTGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCC
AGTTGCTGGTTCTGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGC
TTCCAGTTAAGGATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGT
TCAAAAACTCGATGCATGAAGACATGGAATCCAATCAATAACAAAAAGTT
TGAGGCCCTCTCCTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGG
AGATTGACTACATGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGAT
GAGGTGGGATATGTGCACAGGGAGAATAGCAAAATGCCAGGGTATTATGA
TGGGAGGTATTGGACAATGTGGAAGTTGCCAATGTTTGGATGCAATGATT
CATCTCAAATCCTGAATGAAATACAAGAGTGCAAAAAAGCATACCCAAAT
GCTTATATTCGCTGCTTGGCATTTAACAATCAGAAACAGGGTCAGTGCAT
GTCCTTTCTCAT
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