CX676576
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44 Identity = 79/150 (52.67%), Postives = 111/150 (74.00%), Query Frame = 2 Query: 317 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK S A PV K + + SNG + CM+ W P+ KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG DSSQ+L E+ +CK YP+++IR + F+N +Q QC+SF+ Sbjct: 26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44 Identity = 79/147 (53.74%), Postives = 104/147 (70.75%), Query Frame = 2 Query: 323 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFI 174
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44 Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 2 Query: 392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+ Sbjct: 50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44 Identity = 84/157 (53.50%), Postives = 111/157 (70.70%), Query Frame = 2 Query: 293 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG D+SQ+L E+ E AYP A++R + F+N +Q QC+SF+ Sbjct: 21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFI 173
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44 Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 2 Query: 392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 SNG K CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF+ Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44 Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 2 Query: 317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+ R + F+N +Q QC+SF+ Sbjct: 25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFI 171
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44 Identity = 84/168 (50.00%), Postives = 116/168 (69.05%), Query Frame = 2 Query: 278 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 +A TA AG+ + GLK + + K S +SS SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++E KKAYP+A+IR + F+N++Q QC+SF+ Sbjct: 9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFI 175
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43 Identity = 73/128 (57.03%), Postives = 98/128 (76.56%), Query Frame = 2 Query: 380 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ Sbjct: 47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFI 174
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43 Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2 Query: 392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF+ Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43 Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 2 Query: 392 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF+ Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFI 172 The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 144
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bpback to top |