CX676576
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.143e-35 Identity = 79/169 (46.75%), Postives = 104/169 (61.54%), Query Frame = 2 Query: 275 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35 Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 2 Query: 353 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 691 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 830 HSP 2 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 256 HSP 3 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 400 HSP 4 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 687 HSP 5 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 1118 HSP 6 Score: 148.673 bits (374), Expect = 3.325e-35 Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 1262 HSP 7 Score: 147.517 bits (371), Expect = 7.408e-35 Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 2 Query: 353 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD YWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF+ Sbjct: 404 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFV 543 HSP 8 Score: 146.362 bits (368), Expect = 1.650e-34 Identity = 69/122 (56.56%), Postives = 87/122 (71.31%), Query Frame = 2 Query: 416 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R LAF++ KQ Q +SF+ Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFV 974
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 9.675e-35 Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 2 Query: 275 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 M+A++ + + S K SK + P K SI S K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 1 MAATMMSKTIISS-----KQCSKPIAPPKVSINKGFVNTSAAIKNREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34 Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 419 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSKM-----PGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 K W P+NNK++E SYLP L++ I +++DY++ GW PCLEF + +V N+ GYYD RYWTMWKLPMFGC D SQ+L E+ C+ A+PN YIR +AF+N KQ QCM FL Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFL 150
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34 Identity = 70/133 (52.63%), Postives = 86/133 (64.66%), Query Frame = 2 Query: 389 VSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 +SNG SK+R M W P NNK FE SYLP L+DD I K++DY+L+ W PCLEF + YV +N+ G Y D RYWTMWKLPMFGC D SQ+L EI C KA+P+AYIR + F+ +Q Q FL Sbjct: 25 LSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFL 157
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.056e-33 Identity = 66/126 (52.38%), Postives = 81/126 (64.29%), Query Frame = 2 Query: 404 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 K+R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 41 KSREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 166
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32 Identity = 66/127 (51.97%), Postives = 81/127 (63.78%), Query Frame = 2 Query: 401 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 +K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 38 NKKREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32 Identity = 66/126 (52.38%), Postives = 80/126 (63.49%), Query Frame = 2 Query: 404 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 40 KCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 165
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32 Identity = 69/151 (45.70%), Postives = 90/151 (59.60%), Query Frame = 2 Query: 329 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 K +K L K ++ + +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D+SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 14 KECAKPLASPKVTLNKRGFATTIATKNRGMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32 Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 329 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760 K +K L K ++ + +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q FL Sbjct: 5 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 155 The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 144
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bpback to top |