CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.856e-33 Identity = 69/155 (44.52%), Postives = 91/155 (58.71%), Query Frame = -2 Query: 285 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 728 K +K L K ++ + +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q F + +P Sbjct: 14 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 168
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33 Identity = 67/138 (48.55%), Postives = 86/138 (62.32%), Query Frame = -2 Query: 285 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 677 + TV+N K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C A+P+AYIR + F+ +Q Q F + +P Sbjct: 33 ASTVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 168
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.054e-33 Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = -2 Query: 285 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 653 K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+++Q C KA+P+AYIR + F+ +Q Q F + +P Sbjct: 40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRP 169
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.212e-33 Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = -2 Query: 285 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 656 +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C A+P+AYIR + F+ +Q Q F + +P Sbjct: 39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 169
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27 Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 596 SYLP L+D+ I+K++DY+L W PCLEF + Y +N G Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q F + +P Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 112
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26 Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = -2 Query: 285 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 506 E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N +Q QC+SF KP Sbjct: 3 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22 Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 +++E LSYLP LSD IA++I+YM+++G+IP +EF+E YWTMWKLP+F + ++L E++EC+ YPN YIR + F+N KQ Q +SF + KP Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATT-----------CYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22 Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 +++E LSYLP L+D I K++ Y+L +G+IP +EF+EV E +++ YWT+WKLP+FG S ++L E+Q C+ YP YIR + F+N KQ Q +SF + KP Sbjct: 8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEVS----EPTEL-------YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21 Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 K++E LSYLP LSD IA+++ YM+ +G+IP +EF E P + +WT+WKLP+F + + ++LNE++EC+ Y + YIR + F+N KQ Q +SF + KP Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--------EKDPTPELH---HWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21 Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 ++FE SYLP LSD IA +I+YM+++G+ P +EF+E H + YWTMWKLP+F C Q+L+E++EC+ Y + YIR F+N KQ Q +SF + +P Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |