CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.856e-33
Identity = 69/155 (44.52%), Postives = 91/155 (58.71%), Query Frame = -2
Query:  285 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 728
            K  +K L   K ++       +  +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+  +Q Q   F + +P
Sbjct:   14 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 168          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33
Identity = 67/138 (48.55%), Postives = 86/138 (62.32%), Query Frame = -2
Query:  285 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 677
            + TV+N  K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYWTMWKLPMFGC D SQ+L+EIQ C  A+P+AYIR + F+  +Q Q   F + +P
Sbjct:   33 ASTVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 168          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.054e-33
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = -2
Query:  285 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 653
            K R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYWTMWKLPMFGC D SQ+L+++Q C KA+P+AYIR + F+  +Q Q   F + +P
Sbjct:   40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRP 169          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.212e-33
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = -2
Query:  285 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 656
            +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYWTMWKLPMFGC D SQ+L+EIQ C  A+P+AYIR + F+  +Q Q   F + +P
Sbjct:   39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRP 169          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 596
            SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   +N    G     Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+  +Q Q   F + +P
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 112          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = -2
Query:  285 EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 506
            E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA+IR + F+N +Q QC+SF   KP
Sbjct:    3 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            +++E LSYLP LSD  IA++I+YM+++G+IP +EF+E                  YWTMWKLP+F    + ++L E++EC+  YPN YIR + F+N KQ Q +SF + KP
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATT-----------CYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            +++E LSYLP L+D  I K++ Y+L +G+IP +EF+EV     E +++       YWT+WKLP+FG   S ++L E+Q C+  YP  YIR + F+N KQ Q +SF + KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEVS----EPTEL-------YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21
Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            K++E LSYLP LSD  IA+++ YM+ +G+IP +EF        E    P  +   +WT+WKLP+F  + + ++LNE++EC+  Y + YIR + F+N KQ Q +SF + KP
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--------EKDPTPELH---HWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            ++FE  SYLP LSD  IA +I+YM+++G+ P +EF+E    H    +        YWTMWKLP+F C    Q+L+E++EC+  Y + YIR   F+N KQ Q +SF + +P
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS1_ACEAT1.856e-3344.52Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_ACEAT5.401e-3348.55Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL7.054e-3349.23Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_ACEAT9.212e-3348.85Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_ACECL7.554e-2749.55Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_SINAL2.870e-2664.86Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_PROHO1.474e-2243.64Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ANASP5.602e-2243.64Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_SYNP23.631e-2141.82Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP64.742e-2142.73Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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