CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            +++E LSYLP L+D  IAK+++++L +G+IP +EF+E           P   +  +WTMWKLP FG   ++++L E++EC+   PN YIR + F+N KQ Q +SF + KP
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE--------DPQP---ETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = -2
Query:  285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614
            +KFE  SYLP L+D  IA+++ Y L  G+ P +EF   G             +   WT+WKLP+FG     ++L+EIQ CK+ +PNAYIR +AF++ +Q Q + F + KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFTGKA-----------EDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  285 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFFIQKP 623
            +N++KFE  SYLP +  D I K+++Y++ KGW P +E  E      EN+     +D  YW MWKLPMFG  D   IL E + C KA+PN ++R + F+N  Q +G  M  +  KP
Sbjct:   14 VNSRKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIEHTEP-----ENA-----FD-HYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQSKGAEMVVYRGKP 117          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.865e-17
Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = -2
Query:  285 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 629
            N   +K+FE  SYLP +S + I K+I+Y++ KGW P +E  E      EN+ +       YW MWKLPMFG  D  +I+ EI+ CK++ PN  I+ + ++N +Q Q  +  + +P
Sbjct:   19 NDPKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIEHCEP-----ENAIL------HYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  297 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFF 617
            ++KFE  SYLP+++   I K+++Y++ KGW P +E  E           P +    YW MWKLPMFG  D  +IL E + C KA PN ++R + ++N  Q QG  M  +
Sbjct:   16 SRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE-----------PEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQGAAMVIY 113          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  288 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 611
            KFE LSYLP+L+ D I +++ Y++ KGW P +E  E           P    G YW MWKLPMFG  D   IL E + C K  P+ ++R + ++N KQ Q  S  + +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLVVYR 114          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -2
Query:  285 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 464
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+  +Q Q   F + +P
Sbjct:   13 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 72          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  297 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFF 620
            +++KFE  SYLP L  + I K+++Y++ KGW P +E  E      EN+     +D  YW MWKLPMFG  D   IL E + C KA+P+ ++R + ++N  Q QG  M  F
Sbjct:   15 SSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVEHTEP-----ENA-----FD-HYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIF 113          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  288 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 617
            ++K E  SYLP ++ D I  +++Y++ KGW P +E       H E      YY    W MWKLPMFG  D++ +L E+  C KA PN ++R + ++N  Q Q  +  +++
Sbjct:   16 SRKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSYY----WYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYAME (Ribulose bisphosphate carboxylase small chain OS=Cyanidioschyzon merolae GN=rbcS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  285 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 593
            YLP L+D+ I K+I Y + +GW   +E+ +    H  NS         YW MW LP+F   D + I+ E+QEC+K +PN YI+ LAFN+ K  +   +SF + +P
Sbjct:   10 YLPDLTDEQIRKQIQYAINQGWAVSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPATIMFEVQECRKQFPNHYIKVLAFNSTKGIESTALSFIVNRP 103          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS_SYNY31.056e-2041.82Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_CYAPA2.354e-2040.91Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI4.908e-1841.74Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_PSEHY1.865e-1738.26Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_THIDA1.209e-1638.53Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS2_THIFE1.209e-1639.81Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_ACECL2.062e-1658.33Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_ALVHS2.693e-1640.91Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS1_HYDMR5.999e-1635.45Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_CYAME7.835e-1639.05Ribulose bisphosphate carboxylase small chain OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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