CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20 Identity = 46/110 (41.82%), Postives = 72/110 (65.45%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 +++E LSYLP L+D IAK+++++L +G+IP +EF+E P + +WTMWKLP FG ++++L E++EC+ PN YIR + F+N KQ Q +SF + KP Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE--------DPQP---ETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20 Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = -2 Query: 285 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 614 +KFE SYLP L+D IA+++ Y L G+ P +EF G + WT+WKLP+FG ++L+EIQ CK+ +PNAYIR +AF++ +Q Q + F + KP Sbjct: 7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFTGKA-----------EDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4) HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18 Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = -2 Query: 285 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFFIQKP 623 +N++KFE SYLP + D I K+++Y++ KGW P +E E EN+ +D YW MWKLPMFG D IL E + C KA+PN ++R + F+N Q +G M + KP Sbjct: 14 VNSRKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIEHTEP-----ENA-----FD-HYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQSKGAEMVVYRGKP 117
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.865e-17 Identity = 44/115 (38.26%), Postives = 68/115 (59.13%), Query Frame = -2 Query: 285 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 629 N +K+FE SYLP +S + I K+I+Y++ KGW P +E E EN+ + YW MWKLPMFG D +I+ EI+ CK++ PN I+ + ++N +Q Q + + +P Sbjct: 19 NDPKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIEHCEP-----ENAIL------HYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = -2 Query: 297 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFF 617 ++KFE SYLP+++ I K+++Y++ KGW P +E E P + YW MWKLPMFG D +IL E + C KA PN ++R + ++N Q QG M + Sbjct: 16 SRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE-----------PEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQGAAMVIY 113
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16 Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -2 Query: 288 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 611 KFE LSYLP+L+ D I +++ Y++ KGW P +E E P G YW MWKLPMFG D IL E + C K P+ ++R + ++N KQ Q S + + Sbjct: 18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLVVYR 114
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -2 Query: 285 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 464 Y D RYWTMWKLPMFGC D SQ+L+EIQ C KA+P+AYIR + F+ +Q Q F + +P Sbjct: 13 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 72
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16 Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = -2 Query: 297 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNN--QKQGQCMSFF 620 +++KFE SYLP L + I K+++Y++ KGW P +E E EN+ +D YW MWKLPMFG D IL E + C KA+P+ ++R + ++N Q QG M F Sbjct: 15 SSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVEHTEP-----ENA-----FD-HYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIF 113
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -2 Query: 288 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 617 ++K E SYLP ++ D I +++Y++ KGW P +E H E YY W MWKLPMFG D++ +L E+ C KA PN ++R + ++N Q Q + +++ Sbjct: 16 SRKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSYY----WYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQGANMLVKR 114
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYAME (Ribulose bisphosphate carboxylase small chain OS=Cyanidioschyzon merolae GN=rbcS PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16 Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = -2 Query: 285 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 593 YLP L+D+ I K+I Y + +GW +E+ + H NS YW MW LP+F D + I+ E+QEC+K +PN YI+ LAFN+ K + +SF + +P Sbjct: 10 YLPDLTDEQIRKQIQYAINQGWAVSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPATIMFEVQECRKQFPNHYIKVLAFNSTKGIESTALSFIVNRP 103 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |