CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = -2
Query:  300 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSF 605
            E  S+LP  + D I  +I Y++ +GW P LE +            P      YW MWKLPMFG  D + +L EI +C+ AYPN  IR + ++N  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALEHEA-----------PEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_OLILU (Ribulose bisphosphate carboxylase small chain OS=Olisthodiscus luteus GN=rbcS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602
            A SYLP L+D  I K+IDY L +GW   +E+ +    H  N+         YW +W LP+F   DSS IL E+ EC++  P  YI+ +AFN  +  +    +F +Q+P
Sbjct:    7 AFSYLPDLTDAQIIKQIDYCLSRGWSVGVEWTDDP--HPRNA---------YWELWGLPLFDVKDSSAILYEVNECRRLNPEGYIKLVAFNAARGTESSASAFIVQRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602
            A S+LP L+D+ I K+I Y + K W   +E+ +    H  N+         YW +W LP+FG  D + ++ EI  C+KA P  Y++  AF+N +  +  C+SF +Q+P
Sbjct:    7 AFSFLPDLTDEQIVKQIQYAISKNWALNVEWTDDP--HPRNA---------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  288 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 614
            KK+E  SYLP ++ + + ++I + + +GW P +E  E G   + +          YW MWKLP+FG      ++ EI+ C + +P+  +R +A++N  Q Q M+F + +
Sbjct:   10 KKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVEHTEKGTPAKAS----------YWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  294 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFI 611
            K+E  SYLP++  + + ++I Y++ +GW P +E       H E  +   YY    W MWKLPMFG      ++ E++ C +A+P  ++R + ++N  Q Q  +F +
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE-------HVEPERASTYY----WYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFVV 106          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  288 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 611
            K+E  SYLP ++ + I  +I Y + +GW P +E  EV     +NS        +YW MWKLP FG  +   +L EI+ C+ AYP   ++ +A++N  Q   ++F + +
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEV-----KNSM------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYACA (Ribulose bisphosphate carboxylase small chain OS=Cyanidium caldarium GN=rbcS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L++D I K+I Y + KGW   +E+ +    H  NS         YW MW LP+F   D + I+ E++ C+K   N YI+ LAF++ K  +   MSF + +P
Sbjct:    9 SFLPDLTNDQIRKQIQYAINKGWALSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPAAIMFEVEACRKEKSNYYIKLLAFDSTKGVESTAMSFMVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  285 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 611
            ++E  SYLP L+ + I ++I Y+L  GW   LE       H    +   YY    W MWK+P FG  D + IL EI+ C+++YP+ ++R + ++   Q +  SF   +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE-------HEHPDRAFEYY----WPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_RHOSH (Ribulose bisphosphate carboxylase small chain 1 OS=Rhodobacter sphaeroides GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L+D+ I+ ++DY L +GW   LE  +    H  N+         YW MW +PMF   D   ++ E+ EC+KA+P  YIR  AF++ +  +   MSF + +P
Sbjct:    9 SFLPDLTDEQISAQVDYCLGRGWAVSLEHTDDP--HPRNT---------YWEMWGMPMFDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORAE (Ribulose bisphosphate carboxylase small chain OS=Porphyridium aerugineum GN=rbcS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L+D  I K++ Y + K W   +E+ +    H  NS         +W +W LP+F   D+S ++ EI  C+KA PN YI+  AF+N +  +  C+SF I +P
Sbjct:    9 SFLPDLTDAQIQKQVQYAVSKKWAVSVEYTDDP--HPRNS---------FWELWGLPLFDVKDASALMYEIAACRKAKPNYYIKVNAFDNTRGVESCCLSFIINRP 103          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS2_HYDMR1.131e-1438.24Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_OLILU2.520e-1437.96Ribulose bisphosphate carboxylase small chain OS=O... [more]
RBS_GUITH5.615e-1435.19Ribulose bisphosphate carboxylase small chain OS=G... [more]
RBS_NITVU7.333e-1431.19Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE2.134e-1332.08Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_HALNC2.787e-1334.26Ribulose bisphosphate carboxylase small chain OS=H... [more]
RBS_CYACA2.787e-1336.79Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_CHRVI2.787e-1333.94Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS1_RHOSH4.753e-1335.85Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_PORAE8.108e-1335.85Ribulose bisphosphate carboxylase small chain OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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