CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14 Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = -2 Query: 300 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSF 605 E S+LP + D I +I Y++ +GW P LE + P YW MWKLPMFG D + +L EI +C+ AYPN IR + ++N Q Q +F Sbjct: 15 ETFSFLPEFTADEIYDQIVYIINQGWTPALEHEA-----------PEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_OLILU (Ribulose bisphosphate carboxylase small chain OS=Olisthodiscus luteus GN=rbcS PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -2 Query: 285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602 A SYLP L+D I K+IDY L +GW +E+ + H N+ YW +W LP+F DSS IL E+ EC++ P YI+ +AFN + + +F +Q+P Sbjct: 7 AFSYLPDLTDAQIIKQIDYCLSRGWSVGVEWTDDP--HPRNA---------YWELWGLPLFDVKDSSAILYEVNECRRLNPEGYIKLVAFNAARGTESSASAFIVQRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -2 Query: 285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602 A S+LP L+D+ I K+I Y + K W +E+ + H N+ YW +W LP+FG D + ++ EI C+KA P Y++ AF+N + + C+SF +Q+P Sbjct: 7 AFSFLPDLTDEQIVKQIQYAISKNWALNVEWTDDP--HPRNA---------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14 Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = -2 Query: 288 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 614 KK+E SYLP ++ + + ++I + + +GW P +E E G + + YW MWKLP+FG ++ EI+ C + +P+ +R +A++N Q Q M+F + + Sbjct: 10 KKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVEHTEKGTPAKAS----------YWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFVVYR 108
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13 Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 294 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFI 611 K+E SYLP++ + + ++I Y++ +GW P +E H E + YY W MWKLPMFG ++ E++ C +A+P ++R + ++N Q Q +F + Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE-------HVEPERASTYY----WYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFVV 106
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13 Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = -2 Query: 288 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 611 K+E SYLP ++ + I +I Y + +GW P +E EV +NS +YW MWKLP FG + +L EI+ C+ AYP ++ +A++N Q ++F + + Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEV-----KNSM------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFVVYR 108
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_CYACA (Ribulose bisphosphate carboxylase small chain OS=Cyanidium caldarium GN=rbcS PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13 Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L++D I K+I Y + KGW +E+ + H NS YW MW LP+F D + I+ E++ C+K N YI+ LAF++ K + MSF + +P Sbjct: 9 SFLPDLTNDQIRKQIQYAINKGWALSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPAAIMFEVEACRKEKSNYYIKLLAFDSTKGVESTAMSFMVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13 Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -2 Query: 285 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 611 ++E SYLP L+ + I ++I Y+L GW LE H + YY W MWK+P FG D + IL EI+ C+++YP+ ++R + ++ Q + SF +P Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE-------HEHPDRAFEYY----WPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_RHOSH (Ribulose bisphosphate carboxylase small chain 1 OS=Rhodobacter sphaeroides GN=cbbS PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13 Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I+ ++DY L +GW LE + H N+ YW MW +PMF D ++ E+ EC+KA+P YIR AF++ + + MSF + +P Sbjct: 9 SFLPDLTDEQISAQVDYCLGRGWAVSLEHTDDP--HPRNT---------YWEMWGMPMFDLRDPKGVMIELDECRKAWPGRYIRINAFDSTRGFETVTMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORAE (Ribulose bisphosphate carboxylase small chain OS=Porphyridium aerugineum GN=rbcS PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13 Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D I K++ Y + K W +E+ + H NS +W +W LP+F D+S ++ EI C+KA PN YI+ AF+N + + C+SF I +P Sbjct: 9 SFLPDLTDAQIQKQVQYAVSKKWAVSVEYTDDP--HPRNS---------FWELWGLPLFDVKDASALMYEIAACRKAKPNYYIKVNAFDNTRGVESCCLSFIINRP 103 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |