CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  297 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCMSFF 605
            E   +LP ++ D I  +I Y++ +GW P +E     +VH  NS         YW+ WKLP FG  D + +++E++ C +AYP+ ++R + ++   Q QG C   F
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVVF 110          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  297 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCMSFF 605
            E   +LP ++ D I  +I Y++ +GW P +E     +VH  NS         YW+ WKLP FG  D + +++E++ C +AYP+ ++R + ++   Q QG C   F
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVVF 110          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORCA (Ribulose bisphosphate carboxylase small chain OS=Porphyra carolinensis GN=rbcS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L+D+ I+K++ Y++ KG    +E+ +    H  NS         YW +W LP+F   D+S ++ EI  C+KA PN YI+  AF+N +  +   MSF + +P
Sbjct:    9 SFLPDLTDEQISKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVMSFIVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORKA (Ribulose bisphosphate carboxylase small chain OS=Porphyra katadae GN=rbcS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602
            A S+LP L+D+ I K++ Y++ KG    +E+ +    H  NS         YW +W LP+F   D+S ++ EI  C+KA PN Y++  AF+N +  +   MSF + +P
Sbjct:    7 AFSFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ECTSI (Ribulose bisphosphate carboxylase small chain OS=Ectocarpus siliculosus GN=rbcS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFFIQKP 596
            S+LP LSDD I +++ Y + KGW   +E+ +    H  NS         YW +W LP+F   D + ++ E+ EC+K  P  YI+  AF+     +   MSF +Q+P
Sbjct:    9 SFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  288 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 617
            ++K    SYLP + +  I +++++++K GW P +E  E           P +    YW MWKLPMFG  D   IL E++ C +A P  ++R + ++N  Q Q  +  + +
Sbjct:   16 SRKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIEHTE-----------PDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYR 114          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PLECA (Ribulose bisphosphate carboxylase small chain OS=Pleurochrysis carterae GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602
            A S+LP L+D  + K+I Y L K W   +E+ +    H  NS         YW MW LP+F   D + IL EI   +KA PN Y++   F+N +  +   +SF +Q+P
Sbjct:    7 AFSFLPDLTDAQVTKQIQYALNKSWAISIEYTDDP--HPRNS---------YWEMWGLPLFDVKDPAAILFEINMARKAKPNYYLKIACFDNTRGIESCVLSFIVQRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_BRAJA (Ribulose bisphosphate carboxylase small chain OS=Bradyrhizobium japonicum GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L+DD I K++ Y L KGW   +EF +    H  N+         YW MW LPMF   D++ ++ E+ EC++ Y + YIR   F++    +   +SF + +P
Sbjct:    9 SFLPDLTDDQIYKQVQYCLAKGWAVNIEFTDDP--HPRNT---------YWEMWGLPMFDLQDAAGVMMELAECRRVYGDRYIRISGFDSSPGWESVRISFLVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORPU (Ribulose bisphosphate carboxylase small chain OS=Porphyra purpurea GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602
            A S+LP L+D  I K++ Y++ KGW   +E+ +    H  N+         YW +W LP+F   D + ++ EI  C+KA P+ Y++  AF+N +  +   MSF + +P
Sbjct:    7 AFSFLPDLTDQQINKQLAYIVSKGWSANVEYTDDP--HPRNA---------YWELWGLPLFDVKDPAAVMYEINSCRKAKPSYYVKVNAFDNTRGVESCSMSFIVNRP 103          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORHA (Ribulose bisphosphate carboxylase small chain OS=Porphyra haitanensis GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596
            S+LP L+D+ I K++ Y++ KG+   +E+ +    H  NS         YW +W LP+F   D+S ++ EI  C+KA PN YI+  AF+N +  +   +SF + +P
Sbjct:    9 SFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS_SYNPX1.059e-1233.33Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW1.059e-1233.33Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_PORCA1.383e-1235.85Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_PORKA1.806e-1235.19Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ECTSI1.806e-1234.91Ribulose bisphosphate carboxylase small chain OS=E... [more]
RBS_RHOCA2.359e-1230.91Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_PLECA2.359e-1236.11Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_BRAJA2.359e-1234.91Ribulose bisphosphate carboxylase small chain OS=B... [more]
RBS_PORPU3.081e-1233.33Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_PORHA4.024e-1234.91Ribulose bisphosphate carboxylase small chain OS=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
back to top