CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12 Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = -2 Query: 297 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCMSFF 605 E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKLP FG D + +++E++ C +AYP+ ++R + ++ Q QG C F Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVVF 110
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12 Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = -2 Query: 297 EALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFN--NQKQGQCMSFF 605 E +LP ++ D I +I Y++ +GW P +E +VH NS YW+ WKLP FG D + +++E++ C +AYP+ ++R + ++ Q QG C F Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE-----HVHPSNSM------ATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFVVF 110
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORCA (Ribulose bisphosphate carboxylase small chain OS=Porphyra carolinensis GN=rbcS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12 Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I+K++ Y++ KG +E+ + H NS YW +W LP+F D+S ++ EI C+KA PN YI+ AF+N + + MSF + +P Sbjct: 9 SFLPDLTDEQISKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORKA (Ribulose bisphosphate carboxylase small chain OS=Porphyra katadae GN=rbcS PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -2 Query: 285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602 A S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F D+S ++ EI C+KA PN Y++ AF+N + + MSF + +P Sbjct: 7 AFSFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ECTSI (Ribulose bisphosphate carboxylase small chain OS=Ectocarpus siliculosus GN=rbcS PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12 Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFFIQKP 596 S+LP LSDD I +++ Y + KGW +E+ + H NS YW +W LP+F D + ++ E+ EC+K P YI+ AF+ + MSF +Q+P Sbjct: 9 SFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = -2 Query: 288 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQK 617 ++K SYLP + + I +++++++K GW P +E E P + YW MWKLPMFG D IL E++ C +A P ++R + ++N Q Q + + + Sbjct: 16 SRKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIEHTE-----------PDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYR 114
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PLECA (Ribulose bisphosphate carboxylase small chain OS=Pleurochrysis carterae GN=rbcS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = -2 Query: 285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602 A S+LP L+D + K+I Y L K W +E+ + H NS YW MW LP+F D + IL EI +KA PN Y++ F+N + + +SF +Q+P Sbjct: 7 AFSFLPDLTDAQVTKQIQYALNKSWAISIEYTDDP--HPRNS---------YWEMWGLPLFDVKDPAAILFEINMARKAKPNYYLKIACFDNTRGIESCVLSFIVQRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_BRAJA (Ribulose bisphosphate carboxylase small chain OS=Bradyrhizobium japonicum GN=cbbS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12 Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+DD I K++ Y L KGW +EF + H N+ YW MW LPMF D++ ++ E+ EC++ Y + YIR F++ + +SF + +P Sbjct: 9 SFLPDLTDDQIYKQVQYCLAKGWAVNIEFTDDP--HPRNT---------YWEMWGLPMFDLQDAAGVMMELAECRRVYGDRYIRISGFDSSPGWESVRISFLVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORPU (Ribulose bisphosphate carboxylase small chain OS=Porphyra purpurea GN=rbcS PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12 Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = -2 Query: 285 ALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 602 A S+LP L+D I K++ Y++ KGW +E+ + H N+ YW +W LP+F D + ++ EI C+KA P+ Y++ AF+N + + MSF + +P Sbjct: 7 AFSFLPDLTDQQINKQLAYIVSKGWSANVEYTDDP--HPRNA---------YWELWGLPLFDVKDPAAVMYEINSCRKAKPSYYVKVNAFDNTRGVESCSMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORHA (Ribulose bisphosphate carboxylase small chain OS=Porphyra haitanensis GN=rbcS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12 Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K++ Y++ KG+ +E+ + H NS YW +W LP+F D+S ++ EI C+KA PN YI+ AF+N + + +SF + +P Sbjct: 9 SFLPDLTDEQINKQLAYIVSKGFSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYIKVNAFDNTRGIESCVLSFIVNRP 103 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |