CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORDE (Ribulose bisphosphate carboxylase small chain OS=Porphyra dentata GN=rbcS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12 Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F D+S ++ EI C+KA PN Y++ AF+N + + MSF + +P Sbjct: 9 SFLPDLTDEQINKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SINMW (Ribulose bisphosphate carboxylase small chain OS=Sinorhizobium medicae (strain WSM419) GN=cbbS PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12 Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I +++Y L +GW +E+ + H N+ YW MW PMF D+ ++ E+++C+KA+P YIR AF++ + + MSF + +P Sbjct: 9 SFLPDLTDEQITAQVEYCLGRGWAIGVEYTDDP--HPRNT---------YWEMWGNPMFDLRDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_RHIME (Ribulose bisphosphate carboxylase small chain OS=Rhizobium meliloti GN=cbbS PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I ++ Y L KGW +E+ + H N+ YW MW PMF D+ ++ E+++C+KA+P YIR AF++ + + MSF + +P Sbjct: 9 SFLPDLTDEQITAQVQYCLGKGWAIGVEYTDDP--HPRNT---------YWEMWGNPMFDLKDAKGVMMELEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PORYE (Ribulose bisphosphate carboxylase small chain OS=Porphyra yezoensis GN=rbcS PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12 Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K++ Y++ KG +E+ + H NS YW +W LP+F D+S ++ EI C+KA PN Y++ AF+N + + MSF + +P Sbjct: 9 SFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBSC_RALEU (Ribulose bisphosphate carboxylase small chain, chromosomal OS=Ralstonia eutropha GN=cbxSC PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K+++Y L +GW LE+ + H N+ YW M+ LPMF D++ IL EI + +PN YIR AF++ + MSF + +P Sbjct: 9 SFLPELTDEQITKQLEYCLNQGWAVGLEYTDDP--HPRNT---------YWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PYLLI (Ribulose bisphosphate carboxylase small chain OS=Pylaiella littoralis GN=rbcS PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFFIQKP 596 S+LP LSD+ I ++ Y + KGW +E+ + H NS YW +W LP+F D + ++ E+ EC+K P YI+ AF+ + MSF +Q+P Sbjct: 9 SFLPDLSDEQIKLQVGYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_GALSU (Ribulose bisphosphate carboxylase small chain OS=Galdieria sulphuraria GN=rbcS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K+IDYM+ K +E+ +H NS +W MW LP+F D + +L EI C+KA N YI+ + F++++ + +SF + +P Sbjct: 9 SFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNS---------FWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_ANTSP (Ribulose bisphosphate carboxylase small chain OS=Antithamnion sp. GN=rbcS PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11 Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = -2 Query: 285 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFFIQKP 596 S+LP L+D+ I K+I Y + + W +EF + H N+ YW +W LP+F ND ++ E++ C+K + YI+ AF+N + + +SF I +P Sbjct: 9 SFLPDLTDEQIKKQIAYAVSQNWAINIEFTDDP--HPRNN---------YWELWGLPLFDINDVESVMYELESCRKQHSGLYIKINAFDNTRGVESCVLSFIINRP 103 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |