CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.950e-47
Identity = 83/153 (54.25%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  E++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.032e-47
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = -2
Query:  285 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 677
            S   SNG + +CMK W PI  KK+E LSYLP LSD++++KEIDY+++  WIPCLEF+ E G+V+RE+   PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+IR + F+N +Q QC+SF + KP
Sbjct:   46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.032e-47
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = -2
Query:  285 SIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 773
            ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D+SQ+L E+QE K AYPNA+IR + F+N +Q QC+SF   KP
Sbjct:   10 AVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.032e-47
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S    P        S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF   KP
Sbjct:   25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.571e-47
Identity = 87/154 (56.49%), Postives = 116/154 (75.32%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK TS   +  K ++  +S   +NG +  CM+ W P N KKFE LSYLP+LS++S+ KEI+Y+L KGW+PCLEF EVG  +V+REN+K PGYYDGRYWTMWKLPMFGC D+SQ+  E+ ECK AYP+A++R + F+N++Q QC+SF   KP
Sbjct:   25 FSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.571e-47
Identity = 83/152 (54.61%), Postives = 112/152 (73.68%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK T  A LPV      SS +VSNG + RCM+ W     KKFE LSYLP LS +++ K++DY+++  W+PCLEF +VG++ RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF   KP
Sbjct:   16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 8.583e-47
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S A  PV         ++ SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF   KP
Sbjct:   24 FTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.121e-46
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = -2
Query:  285 SIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 773
            ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMWKLP+FGC D+SQ+L E+QE K AYPN +IR + F+N +Q QC+SF   KP
Sbjct:   10 AVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.121e-46
Identity = 85/153 (55.56%), Postives = 111/153 (72.55%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK ++   +  K +   +S T SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YP A+IR + F+N +Q QC+SF   KP
Sbjct:   24 FTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.121e-46
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665
            SNG +  CM+ W PI  KKFE LSYLP L+D  +AKE+DY+++  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF   KP
Sbjct:   48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS1_NICSY2.950e-4754.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA5.032e-4760.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA5.032e-4752.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FLAPR5.032e-4753.59Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR6.571e-4756.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU6.571e-4754.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH8.583e-4755.84Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS_GLYTO1.121e-4652.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2B_ARATH1.121e-4655.56Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1A_ARATH1.121e-4660.16Ribulose bisphosphate carboxylase small chain 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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