CX676575
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.033e-45 Identity = 74/127 (58.27%), Postives = 97/127 (76.38%), Query Frame = -2 Query: 285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665 SNG K CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF KP Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.049e-44 Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740 + GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44 Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = -2 Query: 285 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 677 + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF KP Sbjct: 47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44 Identity = 81/151 (53.64%), Postives = 109/151 (72.19%), Query Frame = -2 Query: 285 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 734 GLK + + K S +SS SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++E KKAYP+A+IR + F+N++Q QC+SF KP Sbjct: 30 GLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKP 179
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44 Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2 Query: 285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44 Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2 Query: 285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44 Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2 Query: 285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP ++R + F+N++Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44 Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = -2 Query: 285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740 + GLK S A PV + SNGS+ CM+ W P+ KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ + PGYYDGRYWTMW+LP+FG D++Q+L E+ ECK YP A+IR + F+N +Q QC+SF P Sbjct: 25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44 Identity = 80/154 (51.95%), Postives = 111/154 (72.08%), Query Frame = -2 Query: 285 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740 + GLK S A PV K + + SNG + CM+ W P+ KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG DSSQ+L E+ +CK YP+++IR + F+N +Q QC+SF P Sbjct: 26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44 Identity = 85/164 (51.83%), Postives = 113/164 (68.90%), Query Frame = -2 Query: 285 SIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 773 ++ +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG D+SQ+L E+ E AYP A++R + F+N +Q QC+SF P Sbjct: 18 TVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177 The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bpback to top |