CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.033e-45
Identity = 74/127 (58.27%), Postives = 97/127 (76.38%), Query Frame = -2
Query:  285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665
            SNG K  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF   KP
Sbjct:   50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.049e-44
Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = -2
Query:  285 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 677
            +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44
Identity = 81/151 (53.64%), Postives = 109/151 (72.19%), Query Frame = -2
Query:  285 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 734
            GLK  +   +  K S  +SS   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN + PGY DGRYWTMWKLPM+GC D +Q+LNE++E KKAYP+A+IR + F+N++Q QC+SF   KP
Sbjct:   30 GLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKP 179          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2
Query:  285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2
Query:  285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.790e-44
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = -2
Query:  285 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 665
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYWTMWKLPMFGC D+SQ++ E++E KKAYP  ++R + F+N++Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S A  PV       +   SNGS+  CM+ W P+  KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ +  PGYYDGRYWTMW+LP+FG  D++Q+L E+ ECK  YP A+IR + F+N +Q QC+SF    P
Sbjct:   25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 80/154 (51.95%), Postives = 111/154 (72.08%), Query Frame = -2
Query:  285 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S A  PV K +    +   SNG +  CM+ W P+  KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN + PGYYDGRYWTMW+LP+FG  DSSQ+L E+ +CK  YP+++IR + F+N +Q QC+SF    P
Sbjct:   26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 85/164 (51.83%), Postives = 113/164 (68.90%), Query Frame = -2
Query:  285 SIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 773
            ++ +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE++K PGYYDGRYWTMWKLPMFG  D+SQ+L E+ E   AYP A++R + F+N +Q QC+SF    P
Sbjct:   18 TVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS2_LEMGI8.033e-4558.27Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS2_MESCR1.049e-4452.29Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS4_MESCR1.370e-4456.82Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_AMAHP1.370e-4453.64Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_LEMGI1.790e-4457.48Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.790e-4457.48Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.790e-4457.48Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS_TRIRP2.337e-4450.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.337e-4451.95Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_PEA2.337e-4451.83Ribulose bisphosphate carboxylase small chain 3A, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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