CX676573

Overview
NameCX676573
Unique NameCX676573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25_YEAST (60S ribosomal protein L25 OS=Saccharomyces cerevisiae GN=RPL25 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVK++Y++   KVNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:   94 QIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25B_SCHPO (60S ribosomal protein L25-B OS=Schizosaccharomyces pombe GN=rpl25b PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = -3
Query:  208 IKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 351
            IK+AVKK+Y + A K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   94 IKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25_PICJA (60S ribosomal protein L25 OS=Pichia jadinii GN=RPL25 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVK +Y++    VNTLIRP+GTKKAYVRLT D DALD+ANKIG I
Sbjct:   94 QIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIANKIGYI 142          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IKDAV K+Y++QA KVNTLI P   KKAYVRLT D DALDVANKIG+I
Sbjct:   99 QIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25_KLULA (60S ribosomal protein L25 OS=Kluyveromyces lactis GN=RPL25 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVK++Y++    VNTL+RP+GTKKAYVRLT D DALD+AN+IG I
Sbjct:   94 QIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIANRIGYI 142          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25A_SCHPO (60S ribosomal protein L25-A OS=Schizosaccharomyces pombe GN=rpl25a PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = -3
Query:  208 IKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 351
            IK+AV+K+Y ++  K+NTLIRP+GTKKA+V+L+ D+DALDVAN+IG +
Sbjct:   94 IKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_TRYBB (60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK A++K+Y ++  KVNTLIRPDG KKAY+RL+   DALD ANK+G++
Sbjct:  116 EIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164          
The following BLAST results are available for this feature:
BLAST of CX676573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL25_YEAST3.007e-1267.3560S ribosomal protein L25 OS=Saccharomyces cerevis... [more]
RL25B_SCHPO3.927e-1266.6760S ribosomal protein L25-B OS=Schizosaccharomyces... [more]
RL25_PICJA5.129e-1269.3960S ribosomal protein L25 OS=Pichia jadinii GN=RPL... [more]
R23A1_CAEEL6.699e-1273.4760S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]
RL25_KLULA1.143e-1165.3160S ribosomal protein L25 OS=Kluyveromyces lactis ... [more]
RL25A_SCHPO1.492e-1162.5060S ribosomal protein L25-A OS=Schizosaccharomyces... [more]
RL23A_TRYBB9.673e-1159.1860S ribosomal protein L23a OS=Trypanosoma brucei b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G10-M20-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676573 ID=CX676573; Name=CX676573; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTTAAAGAAAAAAATTAATAGCATTATCAGACCAGT
GCATTATTTCATGCACCCACCAATTTGTTAATGCAGGGGATAAAATTCAT
AAACAGTTAACAGGAACAAATTTGGAAATCTTTGTTTGAGGTCTTAACAT
AACTAACTTTTTGGATTAAAAAATACACAAAAATGTGAATGAAAGATCAA
TTGTTTAAATGATTCCAATCTTGTTTGCTACGTCCAAAGCATCAGAGTCT
GGTGTCAACCTGACATAAGCCTTCTTTGTACCATCGGGCCTGATCAAGGT
ATTCACTTTCTTAGCCTGGATATCATACATCTTCTTAACTGCATCCTTTA
TCTTTCTTGCTAGATATGGACCCCTTCTAACAGCTTCATCAAGCTTTTCG
CCTATGCCAGCAAAAGCGGGGTCACTGACAAGATCACTCGAGACAAAAGC
CTTACGAATTGCCTTGCAACAATTGTATCTAGCTTCCATACCTATTTTTG
TTGCTTCAGTACTTGCATCAGTCACTGTGTTTATTATCTCTTGTTTTGAG
CAAAGCTCCATCAGGCACCATGGCCGAGCCACCAACCCAGTTATCATTCT
GTATCCCGCCAATCGGATTTCTGCGGCCTGTTGAAGAACTGATAGAAAGA
GACCTGATGGTGTTAGTTTCGAACTCTCGAGTTTTTTTTTTTTTTTTTTT
TTTTTTGCACCAAGAATGAGCACTATGTTGCATATAAATACGAAAAAATT
CTGACCTT
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