CX676568

Overview
NameCX676568
Unique NameCX676568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4114 contig Csv1_Contig4114:86..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676568 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 47/159 (29.56%), Postives = 78/159 (49.06%), Query Frame = -3
Query:  249 NGCSGGLMTNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEK-IAVRVANFTNIPVDENQIAAHLVHHGPLAIGLNAIF--MQTYIGGV-SCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRL----CRGRGMCGMNT 701
            +GC GG  T + +Y++   G+  E  YPY  K+G+C+   +K   V +  +  +P ++       + + P+++  ++     Q Y GG+   P  CG    +H V  VGYG           + Y ++KNSWG  WG+ GY R+     R +G CG+ T
Sbjct:   61 HGCDGGYQTPSLQYVV-DNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGP--CGTN-TDHAVTAVGYG-----------KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYT 204          
BLAST of CX676568 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 44/154 (28.57%), Postives = 68/154 (44.16%), Query Frame = -3
Query:  255 GCSGGLMTNAYKYLIATGGLEEESSYPYIGKRGKCQFDSEKIAVRVANFTNIPVDENQIAAHLVHHGPL--AIGLNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCR----GRGMCGM 698
            GC GG    A++++I+  G+   + YPY   +G C+ D    +  +  +  +P +      + V   P+  A+  NA F     G  + P  CG   LNH V  +GYG           Q   I    WG +WG+ GY R+ R      G+CG+
Sbjct:   62 GCKGGWEFRAFEFIISNKGVASGAIYPYKAAKGTCKTDGVPNSAYITGYARVPRNNESSMMYAVSKQPITVAVDANANFQYYKSGVFNGP--CGTS-LNHAVTAIGYG-----------QDSIIYPKKWGAKWGEAGYIRMARDVSSSSGICGI 201          
BLAST of CX676568 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 55/166 (33.13%), Postives = 79/166 (47.59%), Query Frame = -3
Query:  255 TCDNG---CSGGLMTNAYKYLIATGGLEEESSYPYIGK----RG----KCQFDSEKIAVRVA-NFTNIPVDENQIAAHLVHHGPLAIG--LNAIFMQTYIGGVSCPLICGKKWLNHGVLLVGYGAKGFSILRLGNQPYWIIKNSWGKQWGDHGYYRLCRGRGMCGM 710
            +CD+G   C+GG + N +K+L  TG   +E   PY       RG    KC   S K+ +  A ++ +  +D   +   L   GPL +   +++ FM  Y  GV      G     H V +VGYG     +       YWIIKNSWG  WG+ GY+R+ RG   C +
Sbjct:  133 SCDHGDMACNGGWLPNVWKFLTKTGTTTDEC-VPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMY-YESGVYQHTY-GYMEGGHAVEMVGYGTDDDGV------DYWIIKNSWGPDWGEDGYFRMIRGINDCSI 289          
The following BLAST results are available for this feature:
BLAST of CX676568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MEX1_JACME1.093e-1129.56Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
BROM2_ANACO1.093e-1128.57Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATB2_GIALA4.153e-1133.13Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G07-M14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676568 ID=CX676568; Name=CX676568; organism=Citrus sinensis; type=EST; length=742bp
GGAAGACACAATAGTATGTAGAAGAGCAGGTCTGAAAAGCATTTTCAAGT
CTAATCCAGAACTTACTTGAGAAAGGGGAATTATGAAACCGGAAAAGCTT
CAATAATTAGAAGATCACAAACAAGAACAAAAGGGAAACTAGCTACCATA
TAACATGAGCTGTCTATATTGCTTTCTGTAGATATTCCAACTTAATAAGA
GGGACTTCAAGTTTAGGAGGAGACTTGAGTGACCACTGCAGAAACCATGG
TGTTCATTCCACACATGCCACGCCCTCGGCAGAGCCGGTAGTACCCATGG
TCTCCCCATTGCTTGCCCCACGAATTCTTGATGATCCAATACGGCTGGTT
TCCAAGCCTAAGAATTGAGAAGCCCTTGGCACCATACCCGACGAGCAGAA
CGCCGTGGTTGAGCCATTTCTTGCCGCAGATTAGCGGGCATGAGACTCCC
CCAATGTATGTTTGCATGAATATAGCGTTCAACCCAATAGCCAGAGGACC
GTGGTGGACTAAATGTGCAGCAATTTGGTTCTCATCGACAGGAATATTGG
TAAAATTTGCAACTCGAACGGCTATTTTCTCTGAATCGAATTGGCATTTG
CCACGCTTCCCAATATAAGGATATGAACTCTCCTCTTCTAGCCCTCCAGT
CGCGATCAAATATTTGTATGCATTTGTCATGAGGCCTCCAGAACAACCAT
TGTCACAAGTACCCTTCTCCTTTATATCACACTACGCATTGA
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