CN184199

Overview
NameCN184199
Unique NameCN184199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_BOVIN (Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.270e-43
Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  199 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 200          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.722e-42
Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 1
Query:  199 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750
            C  H +  +V D+ AGD +CSECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+ G L+T+I K  G S  F      ++QNR   S+ DR ++ AFK I  MSDR+ L   I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K
Sbjct:   15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 200          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_CAEEL (Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38
Identity = 88/187 (47.06%), Postives = 116/187 (62.03%), Query Frame = 1
Query:  199 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750
            C  H +V  + DH AGD VC  CGLV+    +D  +EWR+F+NE   NDP RVG P NPLL+ G LST IA   G  G    +SL   Q +  +N DR +  A   I  MS+R+ L   I+D A+ I+K V + K+ RG+N +A  AACLYIACR++  PRT KEIC+V+   +KKEIGR  + IV+
Sbjct:    7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38
Identity = 85/185 (45.95%), Postives = 121/185 (65.41%), Query Frame = 1
Query:  187 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729
            +C  C+ +  +++ D++ GD +C  CG+V+    +DE SEWRTF+N ES   DP RVGGP NPLL D  LST + K +  SG     +L R QN+ +    DR L+ AFK I  M+D + L  T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE   RT KEI ++ N   KKEI R
Sbjct:   22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPINPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPKKEISR 200          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_SCHPO (Transcription initiation factor IIB OS=Schizosaccharomyces pombe GN=sua7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 83/183 (45.36%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729
            CS+C++    +V + S+GDTVC  CGLVL    ID  SEWRTF+N +    DP RVG   NPLL    L T I+  +GA G  L+ + GR  Q RG   ++ L+ A+K I  M D + L   I D A ++YK+V+D K+ +G++  +++AAC+YIACRQ   PRT  EIC++ N   KKEIGR
Sbjct:   20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKEIGR 197          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 84/188 (44.68%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  199 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750
            C  H E  ++ D+ AGD +CSECGLV+                  GD      GGP NPLL+ G LST+I  P   S  F +    ++ NR +  + DR LI AFK I++M+DR+ L  TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  +  +K
Sbjct:   14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GD----AFGGPENPLLSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK 177          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_ENCCU (Transcription initiation factor IIB OS=Encephalitozoon cuniculi GN=ECU06_1100i PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.396e-31
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1
Query:  190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 744
            CSDC +   +V D+  G  VC  CG ++ +  IDE SEWR+F  +S   DP R+G  +NP L    L T+I+   G +   LS    +   RG  P+R L      I    +R  L  TI DRA+ I+K +E++K  +G+N + ++AAC+YIACRQE+ PRT KEI SV     K+EIGR  + I
Sbjct:   14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGRCFKLI 194          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_KLULA (Transcription initiation factor IIB OS=Kluyveromyces lactis GN=SUA7 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 1
Query:  190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729
            C +CK +  +VV   S GD VC+ CGLVL    +D  SEWRTF+N +   +DP RVG  +NPLL    L+T I +  G+    ++  L R Q++      D  L  A+  I  M D   L   +KD A E YK   +++  +G++Q++++A+ + + CR+ +  R+ KEI S+ N   KKEIG+
Sbjct:   28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKKEIGK 209          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B3_HALSA (Transcription initiation factor IIB 3 OS=Halobacterium salinarium GN=tfbC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 74/199 (37.19%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPDRG---LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753
            C +C     V+ D S  + VC +CGLVLE   ID   EWR F N S  +   RVG PT   + D GL+T I  K   A G  L +        L +WQ R    D G   L  A   I  M+  LG+  ++++ A+ IY++   +   RGR+ + +  ACLY ACRQE  PRT++E+  VA    +KEIGR   Y+ ++
Sbjct:   25 CPECNS-ANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTKTMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEVAR-IDQKEIGRTYRYVAQE 218          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_YEAST (Transcription initiation factor IIB OS=Saccharomyces cerevisiae GN=SUA7 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 1
Query:  190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSS-SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 717
            C +CK +  ++V   S GD VC+ CGLVL    +D  SEWRTF+N+  + +DP RVG  +NPLL    LST I K       F    +  + +N     D  +  AF  I  + D   L   +KD A E YK   D+K+ +G++ ++++AA + I CR+ +  RT KEI S+ +  TK+
Sbjct:   24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKE 202          
The following BLAST results are available for this feature:
BLAST of CN184199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
TF2B_BOVIN3.270e-4350.00Transcription initiation factor IIB OS=Bos taurus ... [more]
TF2B_XENLA4.722e-4250.00Transcription initiation factor IIB OS=Xenopus lae... [more]
TF2B_CAEEL7.056e-3847.06Transcription initiation factor IIB OS=Caenorhabdi... [more]
TF2B_DICDI9.215e-3845.95Transcription initiation factor IIB OS=Dictyosteli... [more]
TF2B_SCHPO7.301e-3545.36Transcription initiation factor IIB OS=Schizosacch... [more]
TF2B_DROVI9.868e-3244.68Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_ENCCU6.396e-3141.08Transcription initiation factor IIB OS=Encephalito... [more]
TF2B_KLULA1.526e-2436.96Transcription initiation factor IIB OS=Kluyveromyc... [more]
TF2B3_HALSA1.993e-2437.19Transcription initiation factor IIB 3 OS=Halobacte... [more]
TF2B_YEAST4.440e-2436.87Transcription initiation factor IIB OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005C10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184199 ID=CN184199; Name=CN184199; organism=Citrus sinensis; type=EST; length=754bp
AGGCTCTTTCTTCCTCTCTTCATTTCTTCACCTAAAAAGTTTCGCACAAC
AATTCCACCGGAATCCCAAAGAACAGGGCTATAATATTAAATTAAAATTA
AAAATTTAAATAATTTTAAAAAATTAAAAGAAGAAACGGAAATACGTAGG
GGATTAAATTAAATCGAAGGGGAAATGACGGACGCCTTTTGCTCGGACTG
CAAGAAGCACACGGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGT
GCTCGGAGTGCGGCCTCGTGTTGGAGTCGCACTCCATCGACGAGACCTCC
GAGTGGCGTACCTTCGCCAACGAATCCGGCGACAACGACCCCGTCCGTGT
CGGCGGCCCCACCAACCCGCTCCTGGCCGACGGCGGCCTCTCCACCGTCA
TCGCCAAGCCTAATGGAGCTTCCGGAGAATTCTTGTCGTCGTCGCTCGGA
CGCTGGCAGAATCGCGGCTCGAATCCGGATCGCGGCTTGATTTTGGCTTT
TAAAACAATTGCTACCATGTCTGATAGGTTAGGCCTCGTTGCAACCATTA
AGGATCGGGCAAATGAGATATATAAGAAGGTGGAAGATCAAAAGTCTAGT
AGAGGCAGAAATCAAGACGCATTATTGGCTGCTTGCCTGTACATTGCTTG
TCGACAAGAAGACAAGCCACGCACTGTTAAGGAAATCTGCTCTGTCGCCA
ATGGAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATTGTGAAA
CAGC
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