CN184199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_BOVIN (Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.270e-43 Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 1 Query: 199 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 200
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.722e-42 Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 1 Query: 199 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750 C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPLL+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDR+ L I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 200
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_CAEEL (Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=2 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 7.056e-38 Identity = 88/187 (47.06%), Postives = 116/187 (62.03%), Query Frame = 1 Query: 199 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750 C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPLL+ G LST IA G G +SL Q + +N DR + A I MS+R+ L I+D A+ I+K V + K+ RG+N +A AACLYIACR++ PRT KEIC+V+ +KKEIGR + IV+ Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.215e-38 Identity = 85/185 (45.95%), Postives = 121/185 (65.41%), Query Frame = 1 Query: 187 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729 +C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D + L T++DRANE+++ ++D+KS++GR+ D ++AA LYIACRQE RT KEI ++ N KKEI R Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPINPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VPKKEISR 200
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_SCHPO (Transcription initiation factor IIB OS=Schizosaccharomyces pombe GN=sua7 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35 Identity = 83/183 (45.36%), Postives = 114/183 (62.30%), Query Frame = 1 Query: 190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729 CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D + L I D A ++YK+V+D K+ +G++ +++AAC+YIACRQ PRT EIC++ N KKEIGR Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPKKEIGR 197
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32 Identity = 84/188 (44.68%), Postives = 112/188 (59.57%), Query Frame = 1 Query: 199 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVK 750 C H E ++ D+ AGD +CSECGLV+ GD GGP NPLL+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DR+ L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIGR + +K Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GD----AFGGPENPLLSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK 177
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_ENCCU (Transcription initiation factor IIB OS=Encephalitozoon cuniculi GN=ECU06_1100i PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.396e-31 Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 1 Query: 190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 744 CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP L L T+I+ G + LS + RG P+R L I +R L TI DRA+ I+K +E++K +G+N + ++AAC+YIACRQE+ PRT KEI SV K+EIGR + I Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNPYLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKREIGRCFKLI 194
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_KLULA (Transcription initiation factor IIB OS=Kluyveromyces lactis GN=SUA7 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24 Identity = 68/184 (36.96%), Postives = 104/184 (56.52%), Query Frame = 1 Query: 190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGR 729 C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N + +DP RVG +NPLL L+T I + G+ ++ L R Q++ D L A+ I M D L +KD A E YK +++ +G++Q++++A+ + + CR+ + R+ KEI S+ N KKEIG+ Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRKKEIGK 209
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B3_HALSA (Transcription initiation factor IIB 3 OS=Halobacterium salinarium GN=tfbC PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24 Identity = 74/199 (37.19%), Postives = 103/199 (51.76%), Query Frame = 1 Query: 190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPDRG---LILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753 C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT + D GL+T I K A G L + L +WQ R D G L A I M+ LG+ ++++ A+ IY++ + RGR+ + + ACLY ACRQE PRT++E+ VA +KEIGR Y+ ++ Sbjct: 25 CPECNS-ANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTKTMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEVAR-IDQKEIGRTYRYVAQE 218
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_YEAST (Transcription initiation factor IIB OS=Saccharomyces cerevisiae GN=SUA7 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24 Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 1 Query: 190 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSS-SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKK 717 C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +NPLL LST I K F + + +N D + AF I + D L +KD A E YK D+K+ +G++ ++++AA + I CR+ + RT KEI S+ + TK+ Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKE 202 The following BLAST results are available for this feature:
BLAST of CN184199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184199 ID=CN184199; Name=CN184199; organism=Citrus sinensis; type=EST; length=754bpback to top |