CN184199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRAE (Transcription initiation factor IIB OS=Pyrobaculum aerophilum GN=tfb PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15 Identity = 49/188 (26.06%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753 V+++ G+ VC CG V++ +D EWR F +E R G P L+++ + + + SG+ L L +WQ R ++ +R I A + + + +G+ ++A EIY++ +++ RGR+ +A+ AA LY+ACR PR + E+ A+++E+ R ++++ Sbjct: 46 VYNYERGEAVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSAMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRIL (Transcription initiation factor IIB OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15 Identity = 49/188 (26.06%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753 V+++ G+ VC CG V++ +D EWR F +E R G P L+++ + + + SG+ L L +WQ R ++ +R I A + + + +G+ ++A EIY++ +++ RGR+ +A+ AA LY+ACR PR + E+ A+++E+ R ++++ Sbjct: 46 VYNYERGEIVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRAR (Transcription initiation factor IIB OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15 Identity = 49/188 (26.06%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753 V+++ G+ VC CG V++ +D EWR F +E R G P L+++ + + + SG L L +WQ R ++ +R I A + + + +G+ ++A EIY++ +++ RGR+ +A+ AA LY+ACR PR + E+ A+++E+ R ++++ Sbjct: 46 VYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGRELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTK-ASRREVARCYRLLLRE 231
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B5_HALSA (Transcription initiation factor IIB 5 OS=Halobacterium salinarium GN=tfbE PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15 Identity = 49/166 (29.52%), Postives = 87/166 (52.41%), Query Frame = 1 Query: 232 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 699 ++ +TVC++CGL+++ SID EW + + R G P P D GLSTVI A G LSS + R Q+RG S +R L I ++ LGL +++D+A ++++ ++++ +GR+ +A+ AA ++ ACR + + ++ +A Sbjct: 33 NSAETVCADCGLIIDEQSIDRGPEW----HRDDADTAKRTGAPLTPARHDRGLSTVIGSGQDARGTALSSEKRRRLARMRREQSRGRWRSTKERNLGHGLTEIRRIASALGLADSVRDQACQLFRTAQNERLLKGRSIEAMAAASVFGACRCNGESWLIDDVAPMA 194
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_THENV (Transcription initiation factor IIB OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15 Identity = 48/188 (25.53%), Postives = 94/188 (50.00%), Query Frame = 1 Query: 220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753 ++++ G+ VC CG V++ +D EWR F +E R G P L+++ + + + SG+ L L +WQ R ++ +R I A + + + +G+ ++A EIY++ +++ RGR+ +A+ AA LY+ACR PR + E+ A+++E+ R ++++ Sbjct: 46 IYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEER-GQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B2_SULSO (Transcription initiation factor IIB 2 OS=Sulfolobus solfataricus GN=tfbB PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14 Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 684 C CK + +D G VC+ C V+E ++D +WR + N N+ RVG P+ P + D G T+I A + + R QN R S D+ L+ + S +L L +K+ A+ I +K+ + ++ +Q L+ A LY +C+ + PR ++E Sbjct: 3 CPYCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTPKVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPEHVKETASLIIRKMVETGLTKRIDQYTLIVAALYYSCQVNNIPRHLQE 167
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B1_HALSA (Transcription initiation factor IIB 1 OS=Halobacterium salinarium GN=tfbA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12 Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1 Query: 247 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRGSNP---DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 732 VC++CGLV+ ID EWRTF+++ D+ P R G P D GLST I +G + L R R + P D I F I + G+ ++D+A ++ + GR + AA +Y CR RT+ EI + A AT+ E+ A Sbjct: 22 VCADCGLVVTDAPIDHGPEWRTFSDDP-DHAPERTGAPLTRSRHDRGLSTEIGYSARLTGRKRRKFARLRRQHKRATIPSKADYNRIYGFTEIRRLIGTFGIGTGLRDQACTLFASAQTAGLLHGRTIEGFAAAGVYATCRTNGVTRTLDEIAAAAR-ATRPELTTA 186 The following BLAST results are available for this feature:
BLAST of CN184199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184199 ID=CN184199; Name=CN184199; organism=Citrus sinensis; type=EST; length=754bpback to top |