CN184199

Overview
NameCN184199
Unique NameCN184199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRAE (Transcription initiation factor IIB OS=Pyrobaculum aerophilum GN=tfb PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 49/188 (26.06%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753
            V+++  G+ VC  CG V++   +D   EWR F +E       R G P   L+++   + +  +    SG+ L          L +WQ R    ++ +R  I A + +  +   +G+     ++A EIY++  +++  RGR+ +A+ AA LY+ACR    PR + E+      A+++E+ R    ++++
Sbjct:   46 VYNYERGEAVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSAMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRIL (Transcription initiation factor IIB OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 49/188 (26.06%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753
            V+++  G+ VC  CG V++   +D   EWR F +E       R G P   L+++   + +  +    SG+ L          L +WQ R    ++ +R  I A + +  +   +G+     ++A EIY++  +++  RGR+ +A+ AA LY+ACR    PR + E+      A+++E+ R    ++++
Sbjct:   46 VYNYERGEIVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_PYRAR (Transcription initiation factor IIB OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 49/188 (26.06%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753
            V+++  G+ VC  CG V++   +D   EWR F +E       R G P   L+++   + +  +    SG  L          L +WQ R    ++ +R  I A + +  +   +G+     ++A EIY++  +++  RGR+ +A+ AA LY+ACR    PR + E+      A+++E+ R    ++++
Sbjct:   46 VYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEE-KGQRARTGAPLTRLISEALTTVIDWRDKDVSGRELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLKSSMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTK-ASRREVARCYRLLLRE 231          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B5_HALSA (Transcription initiation factor IIB 5 OS=Halobacterium salinarium GN=tfbE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 49/166 (29.52%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  232 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVA 699
            ++ +TVC++CGL+++  SID   EW    +    +   R G P  P   D GLSTVI     A G  LSS        + R Q+RG   S  +R L      I  ++  LGL  +++D+A ++++  ++++  +GR+ +A+ AA ++ ACR   +   + ++  +A
Sbjct:   33 NSAETVCADCGLIIDEQSIDRGPEW----HRDDADTAKRTGAPLTPARHDRGLSTVIGSGQDARGTALSSEKRRRLARMRREQSRGRWRSTKERNLGHGLTEIRRIASALGLADSVRDQACQLFRTAQNERLLKGRSIEAMAAASVFGACRCNGESWLIDDVAPMA 194          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B_THENV (Transcription initiation factor IIB OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 48/188 (25.53%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  220 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 753
            ++++  G+ VC  CG V++   +D   EWR F +E       R G P   L+++   + +  +    SG+ L          L +WQ R    ++ +R  I A + +  +   +G+     ++A EIY++  +++  RGR+ +A+ AA LY+ACR    PR + E+      A+++E+ R    ++++
Sbjct:   46 IYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEER-GQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTK-ASRREVARCYRLLLRE 231          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B2_SULSO (Transcription initiation factor IIB 2 OS=Sulfolobus solfataricus GN=tfbB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  190 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 684
            C  CK    + +D   G  VC+ C  V+E  ++D   +WR + N    N+  RVG P+ P + D G  T+I     A     +  + R QN  R S  D+ L+     +   S +L L   +K+ A+ I +K+ +   ++  +Q  L+ A LY +C+  + PR ++E
Sbjct:    3 CPYCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTPKVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPEHVKETASLIIRKMVETGLTKRIDQYTLIVAALYYSCQVNNIPRHLQE 167          
BLAST of CN184199 vs. ExPASy Swiss-Prot
Match: TF2B1_HALSA (Transcription initiation factor IIB 1 OS=Halobacterium salinarium GN=tfbA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1
Query:  247 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRGSNP---DRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRA 732
            VC++CGLV+    ID   EWRTF+++  D+ P R G P      D GLST I      +G      + L R   R + P   D   I  F  I  +    G+   ++D+A  ++   +      GR  +   AA +Y  CR     RT+ EI + A  AT+ E+  A
Sbjct:   22 VCADCGLVVTDAPIDHGPEWRTFSDDP-DHAPERTGAPLTRSRHDRGLSTEIGYSARLTGRKRRKFARLRRQHKRATIPSKADYNRIYGFTEIRRLIGTFGIGTGLRDQACTLFASAQTAGLLHGRTIEGFAAAGVYATCRTNGVTRTLDEIAAAAR-ATRPELTTA 186          
The following BLAST results are available for this feature:
BLAST of CN184199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
TF2B_PYRAE2.885e-1526.06Transcription initiation factor IIB OS=Pyrobaculum... [more]
TF2B_PYRIL3.767e-1526.06Transcription initiation factor IIB OS=Pyrobaculum... [more]
TF2B_PYRAR3.767e-1526.06Transcription initiation factor IIB OS=Pyrobaculum... [more]
TF2B5_HALSA3.767e-1529.52Transcription initiation factor IIB 5 OS=Halobacte... [more]
TF2B_THENV4.920e-1525.53Transcription initiation factor IIB OS=Thermoprote... [more]
TF2B2_SULSO5.440e-1428.74Transcription initiation factor IIB 2 OS=Sulfolobu... [more]
TF2B1_HALSA8.685e-1231.14Transcription initiation factor IIB 1 OS=Halobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005C10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184199 ID=CN184199; Name=CN184199; organism=Citrus sinensis; type=EST; length=754bp
AGGCTCTTTCTTCCTCTCTTCATTTCTTCACCTAAAAAGTTTCGCACAAC
AATTCCACCGGAATCCCAAAGAACAGGGCTATAATATTAAATTAAAATTA
AAAATTTAAATAATTTTAAAAAATTAAAAGAAGAAACGGAAATACGTAGG
GGATTAAATTAAATCGAAGGGGAAATGACGGACGCCTTTTGCTCGGACTG
CAAGAAGCACACGGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGT
GCTCGGAGTGCGGCCTCGTGTTGGAGTCGCACTCCATCGACGAGACCTCC
GAGTGGCGTACCTTCGCCAACGAATCCGGCGACAACGACCCCGTCCGTGT
CGGCGGCCCCACCAACCCGCTCCTGGCCGACGGCGGCCTCTCCACCGTCA
TCGCCAAGCCTAATGGAGCTTCCGGAGAATTCTTGTCGTCGTCGCTCGGA
CGCTGGCAGAATCGCGGCTCGAATCCGGATCGCGGCTTGATTTTGGCTTT
TAAAACAATTGCTACCATGTCTGATAGGTTAGGCCTCGTTGCAACCATTA
AGGATCGGGCAAATGAGATATATAAGAAGGTGGAAGATCAAAAGTCTAGT
AGAGGCAGAAATCAAGACGCATTATTGGCTGCTTGCCTGTACATTGCTTG
TCGACAAGAAGACAAGCCACGCACTGTTAAGGAAATCTGCTCTGTCGCCA
ATGGAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATTGTGAAA
CAGC
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