EY666350

Overview
NameEY666350
Unique NameEY666350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 72/188 (38.30%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN--PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDE-AIISNASLPTNCLGPFV-----KGLDQKFGIIT 793
            ++VAINGFGRIGR  L+    +K      +V A+ D     +  ++ LKYDS  G   + +     D + V G  I+ V  R   P  LPW DLGI++VIE TG++ +    G H++AGAK+V+I+AP K       + T V+GVN   + P E  ++SNAS  TNCL P V     +G+  + G++T
Sbjct:    1 MRVAINGFGRIGRLVLQAMAEQKLLGKEFDVAAVVDLSTDARYFAYQLKYDSVQGKMGSSLSAPAEDILEVGGHRIKCVCGRGLKPSQLPWKDLGIEVVIEATGIYANESSYG-HLEAGAKRVIISAPAKSSDASKPVKTIVMGVNEHEFDPAEHKVVSNASCTTNCLAPVVHVFLKEGVGIETGLMT 187          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 63/172 (36.63%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEAIISNASLPTNCLGPFVKGLDQKFGI 787
            +++AING+GRIGR+ +R  +   +   ++VV IN+       +HL +YDST G F   V  +  + + +    I +V      +LPW +  ID+V++ TG++  R  A  HI AGAKKV+ + P   D+  T V G+N      DE  IS AS  TNC+ P +  LD+ F I
Sbjct:    3 IRIAINGYGRIGRSVVRALYENNRQDEMKVVVINELAEPSAIAHLTQYDSTHGRFPFPVN-LQNNLLKIKNDDIHLVRFSELADLPWHEHDIDIVLDCTGIYGSRADADAHIAAGAKKVIFSHPADPDVDATVVYGINHQQLTGDETFISGASCTTNCMVPVIDTLDKHFAI 173          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 70/179 (39.11%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  275 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-AIISNASLPTNCLGPFVK----GLDQKFGIIT 793
            K++V INGFGR+GR  LR   G  +  LE V IN+  GG   A+HLLK+DS  G +  +V+  G + + +D   +       P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ AS  TNCL P VK    GL  K GIIT
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPE--LEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVEAEG-ERVLIDSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIIT 177          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.117e-23
Identity = 73/181 (40.33%), Postives = 104/181 (57.46%), Query Frame = 2
Query:  275 KLKVAINGFGRIGRNFLRC-WHGRKDSP-LEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-AIISNASLPTNCLGPFVK----GLDQKFGIIT 793
            K++V INGFGR+GR  LR  W    D P LE V IN+  GG   A+HLLK+DS  G +  +V+  G + + +DG  +       P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ AS  TNCL P VK    GL  K GIIT
Sbjct:    2 KVRVGINGFGRMGRLALRAAW----DWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVEAEG-ERVLIDGTPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIIT 177          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  401 SHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEAIISNASLPTNCLGPFVKGLDQKFGII 790
            +++ KYD+  G ++  +VK   +  +    K + V   RNP  +PW   G + V+E TGVF D++ A  HI+ GAKKV+I+AP K D P +V GVN   YK D  I+SNAS  TNC  P  K ++ +FGI+
Sbjct:   12 TYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSK-DAPMFVCGVNEKEYKSDIDIVSNASCTTNCPAPLAKVINDRFGIV 141          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 69/178 (38.76%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL-GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDEAIISNASLPTNCLGPFVKGLDQKFGI 787
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DST G+   +V+         +GK+I + S   PV     DL G+ ++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++AI+SNAS  TN + P    LD+ F I
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVR-------YSNGKLI-IGSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAIAPICAILDKAFSI 169          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 66/178 (37.08%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL-GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDEAIISNASLPTNCLGPFVKGLDQKFGI 787
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DS  G+   +V+             + + S   PV     DL G+D++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++AI+SNAS  TN + P    LD+ F I
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVR--------YSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ-NQAIVSNASCTTNAIAPICAILDKAFKI 169          
BLAST of EY666350 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  551 DLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEAIISNASLPTNCLGPFVKGLDQKFGII 790
            + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNA   TNCL P  K +   FGI+
Sbjct:    2 EYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDKSLKIVSNALCTTNCLAPLAKVIHDNFGIV 80          
The following BLAST results are available for this feature:
BLAST of EY666350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_TREPA1.071e-2338.30Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
E4PD_PSYIN1.071e-2336.63D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
G3P3_ANAVT3.117e-2339.11Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP3.117e-2340.33Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PC_HORVU2.639e-2241.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_HELPJ4.657e-1938.76Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPY3.943e-1837.08Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_MELGA1.714e-1346.25Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-021-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666350 ID=EY666350; Name=EY666350; organism=Citrus sinensis; type=EST; length=794bp
CCACGCGTCCGGGCTTAGCTCAGCTTAGCGACCACTGCTTGCTCTTGCTT
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCATCCAGG
TTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCATC
GACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGG
CAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCA
AGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAG
CCAGATGAGGCCATCATCAGCAATGCTTCTTTGCCAACCAACTGCCTTGG
CCCATTCGTCAAGGGTCTTGACCAAAAATTTGGCATTATCACGG
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