CX676433

Overview
NameCX676433
Unique NameCX676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_TRYBB (60S ribosomal protein L40 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRATNCRKKGCGHCSNLRMKKKLR 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 113
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   27 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    6 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    6 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CX676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_LEIMA4.028e-1461.5460S ribosomal protein L40 OS=Leishmania major GN=U... [more]
RL40_TRYBB1.172e-1361.5460S ribosomal protein L40 OS=Trypanosoma brucei br... [more]
UBIQ_LEITA1.530e-1392.31Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
RL40_TRYCR1.530e-1361.5460S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]
UBIQ_LUMTE1.999e-1397.30Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC7.596e-1389.47Ubiquitin-like protein OS=Autographa californica n... [more]
UBIL_NPVOP1.296e-1289.47Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676433 ID=CX676433; Name=CX676433; organism=Citrus sinensis; type=EST; length=500bp
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTAAAA
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