CX676433

Overview
NameCX676433
Unique NameCX676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
UBIQ_SOLTU3.643e-15100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.643e-15100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.643e-15100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.643e-15100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.643e-15100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.643e-15100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE3.643e-15100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO3.643e-15100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL3.643e-15100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS3.643e-15100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676433 ID=CX676433; Name=CX676433; organism=Citrus sinensis; type=EST; length=500bp
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTAAAA
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