CX676433

Overview
NameCX676433
Unique NameCX676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
UBIQ_RAT8.115e-1597.44Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT8.115e-1597.44Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY8.115e-1597.44Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY8.115e-1597.44Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG8.115e-1597.44Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PHYIN8.115e-1597.44Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_PANTR8.115e-1597.44Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA8.115e-1597.44Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NEUCR8.115e-1597.44Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_MOUSE8.115e-1597.44Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676433 ID=CX676433; Name=CX676433; organism=Citrus sinensis; type=EST; length=500bp
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTAAAA
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