CX676433

Overview
NameCX676433
Unique NameCX676433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.115e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:  123 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.384e-14
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 3 
Query:    3 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
            PDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX676433 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  120 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 275
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
The following BLAST results are available for this feature:
BLAST of CX676433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
UBIQ_CANAL8.115e-1597.44Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_CAMDR8.115e-1597.44Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL8.115e-1597.44Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN8.115e-1597.44Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_AGLNE8.115e-1597.44Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_TRYBB1.060e-1497.44Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
RL40_TETPY1.060e-1466.6760S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]
UBIQ_SHEEP1.384e-1494.87Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_LEIMA2.361e-1494.87Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
RL40_LEITA4.028e-1461.5460S ribosomal protein L40 OS=Leishmania tarentolae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676433 ID=CX676433; Name=CX676433; organism=Citrus sinensis; type=EST; length=500bp
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTAAAA
back to top