CX676410

Overview
NameCX676410
Unique NameCX676410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN3B_ORYSJ (Putative auxin efflux carrier component 3b OS=Oryza sativa subsp. japonica GN=PIN3B PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 8.393e-47
Identity = 104/184 (56.52%), Postives = 130/184 (70.65%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSV-QSSRGPTPRPSNFEENS 551
            GIPLL++MYG YSG LMVQ+VVLQ I+WYTLLLFLFE+R A++LI  QFP+TAASI +  VD DVVSL+G    E  AE+  DG+L + V +S+ SRRS    +  A TPR SNLTG EIYS+SSSRN TPRGS F  +D             R S+FG AD++S+  SSR  TPRPS+F+E++
Sbjct:  123 GIPLLVSMYGPYSGDLMVQIVVLQSIVWYTLLLFLFEFRAARVLIAAQFPDTAASIAAVHVDPDVVSLEGSQ-AEAHAEVAPDGRLRMVVCRSSVSRRS----AAAAATPRASNLTGVEIYSISSSRNATPRGSTFTLADIPGHQPPNS--ALRASSFGAADLFSLHSSSRQHTPRPSSFDEHA 299          
BLAST of CX676410 vs. ExPASy Swiss-Prot
Match: PIN6_ARATH (Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.257e-34
Identity = 91/200 (45.50%), Postives = 121/200 (60.50%), Query Frame = 3
Query:    3 GIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFP-ETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHS-DFYS----MMGVQGFPGG-------------RLSNFGPADMYSVQSSRGPTPRPSNFEE 545
            GIPLL AMYG+Y+ +LMVQ+VVLQCIIWYTLLLFLFE R A++LI  +FP + A SI   +VD DV+SLDG D L T+ E   +G++ + +R+S +S       S   LTPR SNL+ AEI+S+++  N    G   + +  FY+    +M   G  GG             RLS +  +D YS+Q    PTPR SNF E
Sbjct:  117 GIPLLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNAEIFSVNTPNNRFFHGGGGSGTLQFYNGSNEIMFCNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQ----PTPRASNFNE 312          
The following BLAST results are available for this feature:
BLAST of CX676410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIN3B_ORYSJ8.393e-4756.52Putative auxin efflux carrier component 3b OS=Oryz... [more]
PIN6_ARATH1.257e-3445.50Probable auxin efflux carrier component 6 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69E03-I5-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676410 ID=CX676410; Name=CX676410; organism=Citrus sinensis; type=EST; length=654bp
TGGGAATCCCTCTGCTCATCGCCATGTACGGCGAATACTCAGGCAGTCTC
ATGGTACAAGTCGTCGTGTTACAGTGCATTATCTGGTACACTCTCTTGCT
CTTCCTCTTCGAGTACCGCGGCGCCAAGATGCTGATCATGGAGCAGTTCC
CGGAGACTGCTGCTTCAATCGTTTCTTTCAAAGTTGATTCGGATGTGGTG
TCACTTGACGGCCGGGATTTCCTGGAAACCGATGCCGAAATTGGAGATGA
TGGGAAGCTTCACGTGACCGTCAGGAAATCAAATGCTTCTAGAAGGTCAT
TAGGCCCGTGCTCTCTGCCGGCATTAACCCCCCGTCCGTCGAACCTCACC
GGAGCTGAAATTTACAGCTTGAGCTCGTCGAGGAATCCGACGCCTAGGGG
TTCCAATTTTAATCATTCAGATTTTTATTCTATGATGGGTGTCCAAGGTT
TCCCGGGAGGAAGATTGTCAAATTTCGGGCCAGCTGATATGTACTCGGTA
CAATCTTCCAGAGGACCGACACCAAGACCCTCCAATTTTGAAGAAAATAG
CGGACAAGCACTGTCTTCTCCCAGATTCGGGTTTTATCCGGCTCAGACAG
TCCCAACATCGTACCCTGCACCGAATCCCGAGTTTTCGTCTACTCTCACG
AAAA
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