CX676271

Overview
NameCX676271
Unique NameCX676271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.186e-43
Identity = 89/178 (50.00%), Postives = 120/178 (67.42%), Query Frame = -3
Query:  275 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 805
            V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++      ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:   62 VGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.226e-42
Identity = 97/200 (48.50%), Postives = 125/200 (62.50%), Query Frame = -3
Query:  236 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVK 832
            K +  S   + AQNC     GA+TGEVSA ML       VI+GHSERR    E+N  V  +V  AL+ GL VI CVGETL +RESG T  +V+ Q +     +S+  NVV+AYEPVWAIGTGK AT AQA+EVH  +R  + +      A + RI YGGSV  +N  EL A P++DG L+GGASL   +F+ I+++A  K
Sbjct:   53 KVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGLIGGASLNAADFVAIVQAAAGK 252          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.601e-42
Identity = 95/183 (51.91%), Postives = 124/183 (67.76%), Query Frame = -3
Query:  275 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 817
            SD  +AAQ+C+  + GAFTGEVS   L +     VI+GHSERR L  E+++ V  K   A++ GL  I CVGET+E+RES +T  VV  Q T A+A  +S+ +  +V+AYEPVWAIGTGK AT  QAQEVH  +R  +  ++S  +A S RI+YGGSV   N + L AQPD+DG L+GGASLK
Sbjct:   57 SDIGLAAQDCFWEEQGAFTGEVSPAQLRDAGCSHVIIGHSERRQLFGETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSVKPDNIRGLMAQPDIDGALIGGASLK 239          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.091e-42
Identity = 96/191 (50.26%), Postives = 128/191 (67.02%), Query Frame = -3
Query:  245 VAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 805
            V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R  L  +    +A   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.091e-42
Identity = 89/187 (47.59%), Postives = 128/187 (68.45%), Query Frame = -3
Query:  254 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 805
            V+AQN    +GGAFTGE+SA+ML ++ +  VILGHSERRA+ +E++  + +KV  AL   + VI C GE L+ R+SG+   +V  Q +     I+  +W  +VLAYEPVWAIGTG+ A+P QAQE+H  +R+ ++    AE+A    I+YGGSV   N KE+ ++PDVDG L+GGA+LK  +F+ I+
Sbjct:   61 VSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDVDGGLIGGAALKADDFLAIV 247          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.091e-42
Identity = 95/191 (49.74%), Postives = 123/191 (64.40%), Query Frame = -3
Query:  254 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 817
            S   + AQN +    GAFTGEVS  MLV++   +VI+GHSERR    ES+ FV  K+  AL+ GL+ I CVGE+  QR++G    +V  Q +A   ++      NVV+AYEP+WAIGTG  ATPA AQ +HA +R  L +   +E+AA+ RI YGGSV   N  EL AQPD+DG LVGGASL+   F+ II
Sbjct:   57 SPLGLGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGALVGGASLQAASFLRII 247          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.091e-42
Identity = 101/199 (50.75%), Postives = 128/199 (64.32%), Query Frame = -3
Query:  245 KSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQT-KAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 832
            ++L  S+  + AQN    K GAFTGEVS  ML ++ + +VILGHSERRA   E+++ +  K+  A + GL  I CVGETLE+RE G T AVV  Q  K +A   +   +N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L      E+A   RI YGGSV   N KEL A+PD+DG LVGGASLK E F  I+K +
Sbjct:   52 EALEGSNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELLVKLFGREIADKVRIQYGGSVKPENIKELIAKPDIDGALVGGASLKVESFTAIVKGS 250          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_MYXXD (Triosephosphate isomerase OS=Myxococcus xanthus (strain DK 1622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.731e-42
Identity = 97/191 (50.79%), Postives = 120/191 (62.83%), Query Frame = -3
Query:  242 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 805
            +AAQNC     GAFTGE+SA ML  L   +VI+GHSERR L  ++++ V  +     + G+  I CVGETL +RE+  T+AVV  Q +   E     +    VLAYEPVWAIGTG+ AT AQAQEVHA +R  ++     E A   RI YGGSV   N  EL  QPDVDG LVGGASLK  +F  I+K+AT
Sbjct:   66 LAAQNCHWESSGAFTGEISAPMLAELGCAYVIVGHSERRQLFGDTDEQVNKRAKAVRAAGMTPIICVGETLAEREANQTLAVVERQVRGALEGFGAKEVAGFVLAYEPVWAIGTGRNATAAQAQEVHAAIRGLVERLYDGETAGRVRIQYGGSVKPDNAAELLGQPDVDGALVGGASLKAGDFAAIVKAAT 256          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.566e-42
Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = -3
Query:  233 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 817
            S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    +GL  + C+GET  + E+G T  V A Q  A+   +  + ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:   57 SHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CX676271 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.658e-42
Identity = 96/189 (50.79%), Postives = 120/189 (63.49%), Query Frame = -3
Query:  242 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 799
            AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A +R WL +   A VA   +I+YGGSV  AN  EL  Q D+DG LVGGASL   EF  +I  A+
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSVKPANSAELFGQADIDGGLVGGASLDAVEFSKVISGAS 250          
The following BLAST results are available for this feature:
BLAST of CX676271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACTN7.186e-4350.00Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_CHLCH1.226e-4248.50Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_PELPD1.601e-4251.91Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_PSEU52.091e-4250.26Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_FLAJ12.091e-4247.59Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_CHLAA2.091e-4249.74Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_CARHZ2.091e-4250.75Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_MYXXD2.731e-4250.79Triosephosphate isomerase OS=Myxococcus xanthus (s... [more]
TPIS_KLEPN3.566e-4247.76Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_VIBSA4.658e-4250.79Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_68D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-68D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676271 ID=CX676271; Name=CX676271; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTGCAAGAAGGGAAAAGCAAACATTTATTAAATCCACAATGATAAG
TTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAACAATTCTGAAAAT
TTAACTTATTATACTCGAAAGGCGTTGGTAACACTTAACAGACCACAAAA
ATTACAACGCTAGTTTCCAGAAAGCATAACAGAGAAAACTGCAGGCATCA
GCAAGCCGAGTAGCTTGGTCTTAACTTCAATTCTTCTTCACTGTGGCAGA
CTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAA
ATCCATCTACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTT
ACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGAC
ATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAG
CAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGGCTCATAAGCC
AACACAACATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTG
TTCAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCT
CTCCAACACAAGCAATGACTTTCAAGCCTCGAGAAAGTGCATAAGCAACT
TTATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCTCTTCTTTCAGA
ATGACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAGCATCTCAGCAC
TAACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGCAATTTTGAGCG
GCAACATGGAAATCAGACCGCAACAGACTCTTGACCAAAGGAAGAAACAC
AAACGGAGGGCTTACAACAACCTCCACAACATCCT
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