EY666248

Overview
NameEY666248
Unique NameEY666248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.629e-16
Identity = 59/168 (35.12%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  219 FEEYMTSKSRKVDKALDE---ALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDR-VVRAITELGFALGSKGVLKGTSHDLDSGRKEV 710
            F + + +  ++ ++AL      LP Q+   + E M+Y  L GGKR+RP L  A+  + G   + +   A A+E  H  SLIHDDLPA+D+DDLRRG  T H  FGE              F  ++       +DR  +  I+EL  A G  G+  G + DLD+  K V
Sbjct:    3 FPQQLEACVKQANQALSRFIAPLPFQNTPVV-ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHV 169          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAI (Geranyltranstransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.085e-16
Identity = 51/165 (30.91%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  219 FEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVA-AKTGGGSTDRVVRAITELGFALGSKGVLKGTSHDLDSGRKEV 710
            +E Y    ++K+   L++ LP Q    + +AM+YS+ +G KR+R  L  ++ ++   + + +  ++ A+E  H+ SLIHDDLP +DND+ RRGK + H  +GE T            F  ++ +     S  + ++ I+EL +++GS G+  G + DL++ +K+V
Sbjct:    7 YERYKHRINQKLFYTLNQ-LPFQKSSLL-KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPNVSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDV 169          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAP (Geranyltranstransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.072e-15
Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  219 FEEYMTSKSRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRV-VRAITELGFALGSKGVLKGTSHDLDSGRKEV 710
            ++ Y    ++K+ + + E LP Q    +  AM+YS L+GGKR+R  L  A+ E    + + +  ++ A+E+ H+ SLIHDDLP +DND  RRGK + H  +GE              F  ++     G  D + ++ I E   A+G  G+  G   DL+  RK++
Sbjct:    7 YDIYYNRINKKLFEIIQE-LPFQD-SVLFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIRLKMIAEFSNAIGYSGMCIGQMLDLEKERKKI 169          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.167e-14
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  243 SRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAI 629
            S   DK + E +    P+ + +A  + + AGGK+IRP L + SCE VGG+      +A A+E+ HT SLIHDD+  +D+D++RRG+ + H ++GE              FE V      G ++RV  A+
Sbjct:   12 SEVADKRIMECISDITPDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIR---NGDSERVKDAL 135          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: CRTE_RHOCA (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter capsulatus GN=crtE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.167e-14
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  237 SKSRKVDKALDEALPMQ----HPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMAC-ALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALGSKG 662
            S  ++++ AL +AL  +     P  +  A+ Y +  GG RIRP + ++     G D   V   A  ALE+ H  SL+HDDLPA DN D+RRGK + H  + E              FE V A  G  + DR ++ I++LG   G++G
Sbjct:    2 SLDKRIESALVKALSPEALGESPPLLAAALPYGVFPGGARIRPTILVSVALACGDDCPAVTDAAAVALELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFE-VLADVGAVNPDRALKLISKLGQLSGARG 147          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.291e-13
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  243 SRKVDKALDEALPMQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGE 527
            S   D+ + E++    PE +  A  + + AGGK+IRP L + S E VGGD      +A A+E+ HT SLIHDD+  +D+D++RRG+   H ++GE
Sbjct:   12 SEMADERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGE 104          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.686e-13
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  246 RKVDKALDEALP--MQHPEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGE 527
            + + + +DE L   +   +K++ A ++ L AGGKRIRP L + +  L   D   V+P A A+E+ H  +LIHDD+  +DNDD RRGK T H V+GE
Sbjct:   15 KNILQKIDEELKTYVDKDDKLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGE 108          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.152e-12
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:  291 PEKIHEAMRYSLLAGGKRIRPVLCIASCELVGGDE-SLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGERTXXXXXXXXXXXXFEHVAAKTGGGSTDRVVRAITELGFALG-SKGVLKGTSHDLDS 695
            P K+  A+ Y++  GG RIRP L ++     G D  +L    A ALE+ H  SL+HDDLP  D+ ++RRGK T H  + E              FE V A+       R ++ +T L    G   G+  G   + +S
Sbjct:   24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFE-VLARAAADQPQRALQLVTALAVRTGMPMGICAGQGWESES 159          
BLAST of EY666248 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.578e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  300 IHEAMRYSLLAGGKRIRPVLCIASCELVGGDESLVMPMACALEMTHTMSLIHDDLPALDNDDLRRGKATNHTVFGE 527
            + EA  +   AGGKR+RP++ ++S +L+GGD       A A+E+ H  +L+HDD+  +DND LRRG  T H  +GE
Sbjct:   32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGE 105          
The following BLAST results are available for this feature:
BLAST of EY666248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ISPA_ECOLI1.629e-1635.12Geranyltranstransferase OS=Escherichia coli (strai... [more]
ISPA_BUCAI8.085e-1630.91Geranyltranstransferase OS=Buchnera aphidicola sub... [more]
ISPA_BUCAP3.072e-1532.12Geranyltranstransferase OS=Buchnera aphidicola sub... [more]
IDSA_METTM1.167e-1435.66Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOCA1.167e-1434.69Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
IDSA_METTH1.291e-1341.05Bifunctional short chain isoprenyl diphosphate syn... [more]
IDSA_METJA1.686e-1342.71Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOS44.152e-1232.85Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
GGPS_SULSO1.578e-1143.42Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-015-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666248 ID=EY666248; Name=EY666248; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGCCTAGCTGTACCCATTCAGCTCTCCTCAAGAACTCCCCA
CTCAATTATTTCAAAATGCCCTTTATGATCCCATTTCCGAACTTGAAACC
CTTTCCCATGAAAAATAACGCCTGCCACGCTGAAAACTTAGCTTCGGTAA
AACCATCCCAGGGTGCAGAATCGATCATGAACATCAAGCCGGTAAAGATA
GCTCTACCAACTTTCCAGTTTGAAGAATACATGACCAGCAAGTCGAGAAA
AGTGGACAAAGCATTAGATGAGGCATTGCCCATGCAACATCCAGAAAAAA
TACACGAGGCCATGAGATACTCTCTTCTCGCTGGAGGCAAGCGTATCCGT
CCTGTTCTATGCATTGCTTCATGCGAATTAGTAGGAGGAGATGAGTCCTT
GGTGATGCCAATGGCTTGTGCACTAGAGATGACTCACACGATGTCCCTCA
TTCATGATGATCTCCCTGCACTGGACAACGATGATCTTAGACGAGGGAAA
GCTACAAATCACACAGTCTTTGGTGAACGAACCGCAATTCTTGCAGGTGA
TGCTCTGCTTGCCCTTGCATTTGAACATGTAGCAGCCAAGACCGGTGGTG
GGTCAACTGACCGCGTGGTTCGAGCCATTACAGAACTGGGGTTCGCACTT
GGGAGCAAAGGGGTCCTGAAAGGAACAAGTCATGACCTTGACAGTGGAAG
GAAGGAAGTGAAGTCTGAAGGGAATTGGAGTACCATCCTGTTGGCCACAA
ACCGCGGAACCTTATAGAAGCATCCGGGGGGTAGGGGGAGGGATAATCCG
AAGGGGGAGAGGAGATTGGAAAGAAAAGAAGTTCAAACCAGTGCGAGGGG
GCAGAGAATTATACAATCAAACGTGGCGAAGGGTGGGTGTAGAAGAAACA
AGAGGGCACGAAGGTGCAAGCGGAGGAATCTCG
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