EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.961e-24
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            Y+RTV I T+LD+LI P GW++W    AL+TLYY EY N+GPGS T NRV W G+HV++   +  +FT+  FI   SWLP T VPFT  L
Sbjct:  385 YARTVVIGTYLDTLIEPNGWIDWDNVTALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFTLPKFIDSASWLPPTKVPFTINL 474          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.961e-24
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTS 283
            +SRT+ +KT +D +I+PAGW+ WSGDFAL TLYYAE+MNTGPGS+ A RVKW G   LT P     +T   F+ G++W+P T VP+T+
Sbjct:  480 FSRTIIMKTTIDDVIDPAGWLPWSGDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT-PQDALLYTGDRFLRGDTWIPQTQVPYTA 566          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.368e-24
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++ +  +I P GW EWSG FAL+TL Y EY+N G G+ TANRVKW+GY V+TS ++   FT G FI G  WL +T  PF+  L
Sbjct:  498 YSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.451e-24
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +SRTVY+ +++   ++  GW+EW+  FAL+TLYY EY+N+GPGS    RV W GY V+ S ++ ++FTV  FI G+SWLP+T V F +GL
Sbjct:  507 FSRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAEFIYGSSWLPSTGVSFLAGL 596          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPF 277
            +SRT+ + T +D +I+PAGW+ W+GDFALNTLYYAEY N GPGS+ A RVKW G   L SP Q  +FT   F+ GN W+P   VP+
Sbjct:  482 FSRTIIMGTTIDDVIDPAGWLPWNGDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFTPARFLRGNLWIPPNRVPY 566          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++F+D+ I+PAGW  W G+FAL+TLYY EY NTGPG+ T+ RV W+G+ V+    +  QFTV   I G  WL  T V F   L
Sbjct:  468 YSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKLIQGGLWLKPTGVTFQEWL 557          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.076e-22
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++F+   I+P+GW  WSG F L +L+Y EY N+GPGSS + RVKW G H   + ++  +FTV +FI GN WLP+T V F  GL
Sbjct:  427 YSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPSTGVSFDPGL 516          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 42/90 (46.67%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV++++++  ++ P GW+EW+G   L+T+YY EY N GPG++T  RV+W GY++L + ++   FTV NF  G++WLP T++PF  GL
Sbjct:  527 YSRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL-NLAEAMNFTVYNFTMGDTWLPQTDIPFYGGL 615          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.974e-22
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTVYI++++  ++ P GW+EW+G   L+T+ Y EY N GPG+ T+ RV+W GY +L +  Q   FTV NF  G++WLP T++PF  GL
Sbjct:  532 YSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDTWLPQTDIPFYGGL 620          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +S TV + ++L   I+  GW+ W+GD A +T++Y EY NTGPG+ST NRVKW+G   L S  + ++FTV  FI G  WLPAT VPF SGL
Sbjct:  473 FSTTVIMDSYLHGFIDRKGWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRFL-STKEANRFTVKPFIDGGRWLPATKVPFRSGL 561          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME38_ARATH1.961e-2454.44Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME23_ARATH1.961e-2455.68Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME2_ARATH4.368e-2453.33Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME34_ARATH7.451e-2450.00Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME58_ARATH1.660e-2355.81Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME18_ARATH2.831e-2351.11Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME16_ARATH1.076e-2251.11Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME25_ARATH1.405e-2246.67Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH6.974e-2248.89Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME24_ARATH1.190e-2152.22Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
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