EG358200

Overview
NameEG358200
Unique NameEG358200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:1..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_PANMO (Elongation factor Tu, chloroplastic (Fragment) OS=Pandorina morum GN=tufA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.055e-53
Identity = 103/145 (71.03%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:   25 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP++VVFLNK                       YEFPGD++P++ G+ALLALEAL+ANP  +RGEN+WVDKIYELMD VDSYIP P+R+TD PFLLAVEDV SITGR
Sbjct:    1 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLDKYEFPGDEIPVVPGTALLALEALIANPKTQRGENKWVDKIYELMDKVDSYIPTPERETDKPFLLAVEDVLSITGR 145
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_THET2 (Elongation factor Tu OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP +VVF+NK                     + YEFPGD+VP+I GSALLALE +  NP  +RGEN+WVDKI+EL+D++D YIP P R  D PFL+ VEDVF+ITGR
Sbjct:   83 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 100/153 (65.36%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILV S ADGPMPQT+EHILLAKQVGVP++VVFLNK                     S Y+FPGD++P ++GSALLALE  +  P I RGE++WVD I+ELMD +D YIP P+R+TD  FL+AVEDVFSITGR
Sbjct:   82 CPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLAKQVGVPHIVVFLNKADMVDDEELLELVELEVQELLSKYDFPGDEIPFVAGSALLALETAVGKPDIGRGEDKWVDTIFELMDKIDEYIPTPERETDKSFLMAVEDVFSITGR 234
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_GYMST (Elongation factor Tu, chloroplastic (Fragment) OS=Gymnochlora stellata GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 105/154 (68.18%), Postives = 118/154 (76.62%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALM-ANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH+LLAKQVGVP++VVFLNK                      +Y+FPGDD PII+GSALLAL+AL     +I RG N WVDKI  LMD+VD YIP P+R+T+ PFL+AVEDVFSITGR
Sbjct:   56 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDEELLELVELEVREMLDNYDFPGDDTPIITGSALLALQALTDTTDAIGRGSNPWVDKILTLMDNVDEYIPTPERETEKPFLMAVEDVFSITGR 209
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILV S A+GPMPQT+EHILLAKQVGVP +VVFLNK                       Y+FPG ++P ++GSALLALEA+  NP+IKRGE++WVD IY+LMD VD YIP P+R+TD  FL+AVEDVFSITGR
Sbjct:   81 CPGHADYVKNMITGAAQMDGAILVCSAANGPMPQTREHILLAKQVGVPYIVVFLNKADMVDDEELLELVQLEVQELLEKYDFPGSEIPFVAGSALLALEAVANNPTIKRGEDKWVDTIYQLMDKVDEYIPTPERETDKAFLMAVEDVFSITGR 233
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVS ADGPMPQT+EHILLAKQVGVP++VVFLNK                     S Y+FPGD +P ++GSALLALEA M NP I  G+++WVDKI+ELM  VD YIP PQR  D  FL+AVEDVFSITGR
Sbjct:   83 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPSIVVFLNKADMVDDPELLELVELEVRELLSKYDFPGDTIPFVTGSALLALEACMKNPKIGEGKDKWVDKIFELMKIVDEYIPTPQRDVDKSFLMAVEDVFSITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 101/153 (66.01%), Postives = 118/153 (77.12%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADYVKNMITGAAQMDGAILVVS ADGPMPQT+EHILLAKQVGVP++VVFLNK                     S Y+FPG++VP ++GSALLALEA + NP+I +G+++WVDKI+ELMD VD Y P P+R  D  FL+AVEDVFSITGR
Sbjct:   83 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPSIVVFLNKADMIDDEELLELVELEVRELLSKYDFPGEEVPFVAGSALLALEACLKNPTIGKGKDKWVDKIFELMDMVDKYFPTPERDIDKTFLMAVEDVFSITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP +VVF+NK                     + YEFPGD+VP+I GSALLALE +  NP  +RGEN+WVDKI+EL+D++D YIP P R  D PFL+ VEDVF+ITGR
Sbjct:   83 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU1_THETH (Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP +VVF+NK                     + YEFPGD+VP+I GSALLALE +  NP  +RGEN+WVDKI+EL+D++D YIP P R  D PFL+ VEDVF+ITGR
Sbjct:   83 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGR 235
[Close]
BLAST of EG358200 vs. ExPASy Swiss-Prot
Match: EFTU1_THET8 (Elongation factor Tu-A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufA PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 2.684e-53
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 
Query:    1 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 459
            CPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGVP +VVF+NK                     + YEFPGD+VP+I GSALLALE +  NP  +RGEN+WVDKI+EL+D++D YIP P R  D PFL+ VEDVF+ITGR
Sbjct:   83 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGR 235
The following BLAST results are available for this feature:
BLAST of EG358200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PANMO2.055e-5371.03Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_THET22.684e-5364.71Elongation factor Tu OS=Thermus thermophilus (stra... [more]
EFTU_RHDSA2.684e-5365.36Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_GYMST2.684e-5368.18Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_GUITH2.684e-5366.01Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_CYAME2.684e-5367.32Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_CYACA2.684e-5366.01Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU2_THET82.684e-5364.71Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTU1_THETH2.684e-5364.71Elongation factor Tu-A OS=Thermus thermophilus GN=... [more]
EFTU1_THET82.684e-5364.71Elongation factor Tu-A OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank description10d5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010d5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358200 ID=EG358200; Name=EG358200; organism=Citrus sinensis; type=EST; length=461bp
TGCCCTGGCCACGCCGATTATGTTAAGAATATGATTACTGGCGCTGCCCA
AATGGACGGTGCGATTTTGGTGGTGTCCGGTGCTGATGGGCCAATGCCAC
AAACTAAAGAACATATTTTGTTGGCTAAGCAAGTGGGTGTCCCTAACATG
GTTGTGTTTTTGAATAAACAGGACCAGGTTGATGATGAAGAGCTGTTGCA
ACTTGTGGAATTGGAGGTTCGTGAGTTACTTTCTTCTTATGAATTTCCTG
GTGATGATGTGCCTATTATTTCTGGTTCTGCGCTCTTAGCTTTAGAGGCT
TTGATGGCTAATCCTAGTATTAAGAGAGGAGAGAATCAATGGGTTGATAA
GATTTATGAGCTTATGGATTCTGTTGATAGTTACATTCCTATCCCACAAA
GACAAACTGATTTGCCCTTTTTGTTAGCTGTTGAAGATGTGTTTTCAATT
ACTGGTCGTGG
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