CX676161

Overview
NameCX676161
Unique NameCX676161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676161 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.551e-11
Identity = 53/170 (31.18%), Postives = 82/170 (48.24%), Query Frame = -2 
Query:  105 LSLANNSLSGILHLLPNAKHDMLRHLDSSNNNFAGKLPRNMGIVLQKLIYLDMPKNIFEGDIPYSIGEMKELYMQDLSRNNFSGELPRPIVSGCVAXXXXXLSNNNFFGQIFPKYMNLTHLHWLYLDNNHFSGKMDDGLRSSTSLEGLDISDNMLSGNIPNWIGNISTLR 614
            + L+   LSG L      K   L  LD S+NN  G LP      LQ+   L++  N F G   YS+ ++  L   +L  N F G++     S   +      S N+F   +   + +LT L  LYL NN FSG +D  + +   LE L+I++N  +G IP+ +  I+ ++
Sbjct:   76 IKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPPNLQR---LNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDF-SKLDSLTTLDFSFNSFTNSLPATFSSLTSLKSLYLQNNQFSGTVD--VLAGLPLETLNIANNDFTGWIPSSLKGITLIK 239
The following BLAST results are available for this feature:
BLAST of CX676161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
SRF6_ARATH8.551e-1131.18Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_67E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67E12-I23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676161 ID=CX676161; Name=CX676161; organism=Citrus sinensis; type=EST; length=828bp
CCAGACAAACTATTTTCAAAGATGTCTATAAGCTCAAGACTTTTAAGTTG
GCTAAGTTGGACTAGAATATTAGCTTCCAAATAATTTTTTGACATTAAAA
GAACCCTAAGAGTTGAGATGTTACCAATCCAATTAGGAATATTACCGGAT
AACATGTTGTCAGATATATCTAACCCCTCTAATGAAGTGGAGCTCCTCAA
ACCATCATCCATCTTCCCACTGAAATGATTGTTGTCCAAATATAACCAAT
GCAAATGGGTCAAGTTCATATATTTGGGAAAAATTTGGCCAAAGAAATTG
TTATTTGATAGGTCTAACAAATCTAGAGCGACGCAACCAGAGACTATAGG
TCGGGGTAATTCTCCTGAAAAATTATTTCTAGACAAATCCTGCATATATA
ACTCTTTCATCTCACCTATTGAATAAGGAATATCACCTTCAAAAATATTT
TTTGGCATATCCAAATAAATCAATTTCTGAAGGACAATACCCATATTCCG
TGGTAGCTTACCAGCGAAATTGTTATTGGAACTATCTAGATGACGAAGCA
TATCGTGTTTGGCATTGGGAAGTAGATGAAGAATTCCTGAGAGTGAGTTG
TTCGCCAAAGACAAATATTTTTATCTTTTGTTGTTTTGGAACAACCAAAT
TGGGAAATTGCCAACCACCTTATTATTAGAGAGGTCAAGGAATATTAAGT
GGTAATGTTGTAAAAGAAAACTAGGAATGACATGTAAGTGGCAGTCGGAT
AATTTGAGAACCTTCAATTGAGATGTGGGGTGCCAGGTTTCAGTTTTCAC
TTGTAACATATTGCTTCCTGATGAGATT
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