CN182848

Overview
NameCN182848
Unique NameCN182848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.241e-15
Identity = 60/199 (30.15%), Postives = 93/199 (46.73%), Query Frame = -2
Query:   93 DVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 689
            DVTKEEDV + V+ A+   G LD+M NNA           L++++   ++  NL G   G + A K  +E   KG++I  SS   ++       Y+ SK  +  +  + A E    GIRVN I P  + + +    +   + +AD++             +  G     E+VA  A FLAS +A ++T   L  DGG T
Sbjct:   65 DVTKEEDVVNLVQTAIKEFGTLDVMINNA-GVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVE-----------SMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 60/199 (30.15%), Postives = 93/199 (46.73%), Query Frame = -2
Query:   93 DVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 689
            DVTKEEDV + V+ A+   G LD+M NNA           L++++   ++  NL G   G + A K  +E   KG++I  SS   ++       Y+ SK  +  +  + A E    GIRVN I P  + + +    +   + +AD++             +  G     E+VA  A FLAS +A ++T   L  DGG T
Sbjct:   65 DVTKEEDVVNLVQTAIKEFGTLDVMINNA-GVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVE-----------SMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = -2
Query:   93 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRK---GSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 707
            A ++H DVT E     AV   ++   +LD + NNA          + N E+   +  +N+  +  G     +A+IE  RK   G I+  SS   ++G   + AY  SK A+    ++ A +L    IRVN + P  + + M               P+    ++   G  L GR+A   +V+QA LFL S+EA F+    LV+DGGYT
Sbjct:   57 AHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSN-EEWDRIFEINVRSVFLG----TRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDA--------PQSARALL---GPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = -2
Query:   93 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRK---GSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 707
            A ++H DVT E     AV   ++   +LD + NNA          + N E+   +  +N+  +  G     +A+IE  RK   G I+  SS   ++G   + AY  SK A+    ++ A +L    IRVN + P  + + M               P+    ++   G  L GR+A   +V+QA LFL S+EA F+    LV+DGGYT
Sbjct:   57 AHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSN-EEWDRIFEINVRSVFLG----TRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDA--------PQSARALL---GPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 63/205 (30.73%), Postives = 99/205 (48.29%), Query Frame = -2
Query:   93 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 707
            A  I  DVTKE  V   V +     G+LDI+ NNA              +  + L+ V L      +KH    M + Q+ G II  +S   ++G     AY+ +K  +IGL +  A E   HGI VN + P  V ++++ N         ++  + V + V     + + R  S++++A  A+FLASE+A  +T   +V+DGGYT
Sbjct:   54 AAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGIQHVAPIEE-FPTDTFEQLIKVMLTAPFIAMKHVFPIM-KKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQV-IFPLVPQKRLLSVKEIADYAVFLASEKAKGVTGQAVVLDGGYT 255          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 59/197 (29.95%), Postives = 98/197 (49.75%), Query Frame = -2
Query:   99 DVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 689
            DV+K + V + V+  ++  G +D++ NNA           ++ E+   ++  NL  I +      + MI+  R G+I+  SS   + G      Y+ +K  IIG +++ + E+G   IRVNCI+P  + ++M         G +D    E  K V        GR  + E++A AALFLAS ++ +IT   L +DGG
Sbjct:   65 DVSKNDMVSAQVQKFLAEYGTIDVVVNNAGITRDSLLMR-MSEEEWSSVIDTNLGSIYNVCSAVIRPMIKA-RSGAIVNISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMT-------KGLSDNLKNEWLKGVP------LGRVGTPEEIAMAALFLASNQSSYITGQVLSVDGG 246          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: FABG_BUCAI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 58/185 (31.35%), Postives = 88/185 (47.57%), Query Frame = -2
Query:   99 KGQLDIMFNNAXXXXXXXXXXSLNMEDVKF--LLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVN----AYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 635
            K  +DI+ NNA           +NM+  ++  ++  NL+ + H +K   ++MI+ +R+G II   S  A  G      YS SK  +IG  +S A E+   GI VN +SP  + +          Y+KYL    MK                 R    E+VA A +FLAS++A +IT H L ++GG
Sbjct:   77 KHSIDILINNAGIKEDNLL---VNMKSTEWDDVIKTNLSSVFHLVKSVIRSMIK-KRQGRIITIGSVIAYTGNKGQVNYSASKSGLIGFHKSLALEVASKGITVNIVSPGLIKTNFTEKLNSIQYQKYLSNIPMK-----------------RFGQKEEVADAVIFLASKKASYITGHTLHVNGG 240          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -2
Query:   99 LNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 569
            ++ ED   +++VNL G     + AA+A++    +GSII  SS    +G +    Y+ SK  +IGL ++ A ELG+HGIR N + P  + + M               PE+V   V  +  +  G     EDVA    FLASE++G+IT  ++ + GG
Sbjct:  113 MSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPM-----------TQKMPEKVKDKV--TAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 256          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 62/204 (30.39%), Postives = 99/204 (48.53%), Query Frame = -2
Query:   93 YIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGL-ARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 701
            ++  D+T E   ++A+  AV   G LD++ NNA           + + D   +L+VNL G+    KHA K M++   KG+II T S   ++      AY+ SK  ++   A      + KH IRVNC+ P  + + +     + +L   +   EE+ K       LLR      E++A   LFLAS+ + ++T   +  DGGYT
Sbjct:   56 FVQTDITNEPACQNAILSAVDKFGGLDVLINNAGIEIVAPIHE-MELSDWNKVLNVNLTGMFLMSKHALKYMLKSG-KGNIINTCSVGGVVAWPDIPAYNASKGGVLQTDAFYRPSIIAKHNIRVNCVCPGIIDTPL---NEKSFLENNEGTLEEIKKEKAKVNPLLR--LGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 252          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -2
Query:   99 LNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 569
            ++ ED   +++VNL G     + AA+A++    +GSII  SS    +G +    Y+ SK  +IGL ++ A ELG+HGIR N + P  + + M               PE+V   V  +  +  G     EDVA    FLASE++G+IT  ++ + GG
Sbjct:  114 MSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPM-----------TQKMPEKVKDKV--TAMIPLGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 257          
The following BLAST results are available for this feature:
BLAST of CN182848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
DHG3_BACME2.241e-1530.15Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
DHG4_BACME3.822e-1530.15Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
CPNA_COMTE3.822e-1530.29Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS93.822e-1530.29Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
YXJF_BACSU4.992e-1530.73Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
FABG_CHLMU4.992e-1529.953-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG_BUCAI6.520e-1531.353-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
DHB8_RAT6.520e-1533.12Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
BACC_BACAM6.520e-1530.39Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
DHB8_MOUSE8.515e-1533.12Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182848 ID=CN182848; Name=CN182848; organism=Citrus sinensis; type=EST; length=762bp
CTTGCTGGTAATAGAAAATCATATGCTCTCATTTTTTATGTTCCCATACT
CAAGAACTATTGGTAGATAAAACTCATGCTACTGGTACCTGTAGTATAAC
CTCCATCAATAACAAGATTGTGTGCTGTTATAAATCCAGCTTCTTCACTT
GCTAGAAACAGCGCAGCTTGTGCCACATCTTCTATGCTTGCACTCCTCCC
ACGCAGCAAACTTCCACTGTCTCGCACCATCTTGCACACTTCTTCAGGTT
TCATATCAGCTTTCCCCAGGTACTTTCTGTAGGCATTCACAAGCATCTCT
GAAGGAACTCCATGAGGCGAGATGCAGTTCACTCGAATTCCATGCTTGCC
CAGCTCGCAGGCTGTGCTTCTTGCCAAGCCAATGATTGCCTCTTTTGACA
ACGAATAGGCATGGGATGCAAGGCCACCCATGATGGCTGCAGAGCTAGAA
GTGCAGATAATACTGCCTTTTCTCTGGCCTTCGATCATGGCCTTCGCCGC
ATGCTTGATTCCATGTAATATGCCATTCAGATTAACTGAGAGAAGAAACT
TCACATCTTCCATGTTAAGGCTTGTGATGCTGCCTCCAGAGCCAGAAATT
CCAGCATTGTTGAACATTATGTCTAACTGGCCTTTCCAGGAAACTGCAAG
CCGGACAGCTGATTCAACATCTTCTTCCTTTGTCACGTCGCAATGTATGT
ACCCGGCCGCCTATTGTGCTGGCTAGAGCAGCGCCGAGTTCATCAAGAAT
GTCTGCTATGAC
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