CN182848

Overview
NameCN182848
Unique NameCN182848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 59/198 (29.80%), Postives = 88/198 (44.44%), Query Frame = -2
Query:   99 CDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 692
            C V K ED E  V  AV   G +DI+ +NA           +  E     L +N+       K     M E +  GS++  SS AA         Y++SK A++GL ++ A EL    IRVNC++P      ++  ++ + L     K E + + +R        R    ED A    FL SE+A +IT   +V+ GG
Sbjct:   70 CHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEM-EKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAP-----GLIKTSFSRMLWMDKEKEESMKETLRIR------RLGEPEDCAGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: LINX_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = -2
Query:   87 YIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYTTG 701
            +I  DVT      +A+  AV   G L  + N A            ++E    +++VN   I  GIK A   +++    GSII  SS   +     + +Y  +K A+  ++++ A E    G+RVN I P G+ + +  N            P +V K  + +  +  G+     D+A  ALFLAS+EA +IT  +L IDGG++ G
Sbjct:   60 FIRLDVTDAASWNNAIAAAVDGFGGLTTLSNTAGIIHPGGFEEE-SIEGWNKMVAVNQTAIFLGIKAAIPELVKSGN-GSIINISSLIGMFPTAGNASYCATKAAVRIMSKAAALEFVDRGVRVNTIVPGGMNTPITANV-----------PPDVLK--QQTSQIPMGKLGDPIDIANGALFLASDEAKYITGVDLPIDGGWSVG 249          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 56/198 (28.28%), Postives = 92/198 (46.46%), Query Frame = -2
Query:   99 CDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 692
            C V K ED E  V  A++  G +DI+ +NA           +  E    +L +N+  +    K     M E +  GS++  +S AA         Y++SK A++GL ++ A EL    IRVNC++P      ++  ++ K L +   + E + + +R        R    E+ A    FL SE+A +IT   +V+ GG
Sbjct:   70 CHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEM-EKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAP-----GLIKTSFSKALWEDKAQEENIIQKLRIR------RLGKPEECAGIVSFLCSEDASYITGETVVVAGG 255          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: BDH2_HUMAN (3-hydroxybutyrate dehydrogenase type 2 OS=Homo sapiens GN=BDH2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 56/200 (28.00%), Postives = 101/200 (50.50%), Query Frame = -2
Query:   93 DVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHA-YSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGGYT 689
            DVTK++ ++           +LD++FN A              +D  F +++N+  +   IK     M+  Q+ G+II  SS A+ + G+ +   YS +K A+IGL +S A +  + GIR NC+ P  V +  L    +   G  +    +  K  +       GR A+ E++A   ++LAS+E+ ++T + ++IDGG++
Sbjct:   58 DVTKKKQIDQFANEVE----RLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFLPKML-AQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQA-RGNPEEARNDFLKRQK------TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: YOXD_BACSU (Uncharacterized oxidoreductase yoxD OS=Bacillus subtilis GN=yoxD PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = -2
Query:  237 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEV 707
            A +   DV   + V  AV       G +DI+ NNA           L+ ++ + ++ VNL G+ H  +     MIE ++ G II  SS+A   G   + AYS SK A++GL  S   E+ KH IRV+ ++P  V S+M +      L   D  PE+V
Sbjct:   57 AAFAAADVKDADQVNQAVAQVKEQLGDIDILINNAGISKFGGFLD-LSADEWENIIQVNLMGVYHVTRAVLPEMIE-RKAGDIINISSTAGQRGAAVTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDMSIE-----LNLTDGNPEKV 206          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 54/200 (27.00%), Postives = 94/200 (47.00%), Query Frame = -2
Query:   99 IHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 698
            I  +V K ++V+  ++  VS  G +D++ NNA           +  ++   ++  NL G+ + I+     M+  QR G+II  +S    MG      Y  +K  +IGL ++ A EL   GI VN ++P  + S+M  NA    L    ++   + +   D+            D+A    FLAS++A +IT   + ++GG
Sbjct:   57 IQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMR-MKEQEWDDVIDTNLKGVFNCIQKVTPQMLR-QRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDM-TNALSDDLKDQMLEQIPLKRFGEDT------------DIANTVAFLASDKAKYITGQTIHVNGG 241          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 54/200 (27.00%), Postives = 94/200 (47.00%), Query Frame = -2
Query:   99 IHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 698
            I  +V K ++V+  ++  VS  G +D++ NNA           +  ++   ++  NL G+ + I+     M+  QR G+II  +S    MG      Y  +K  +IGL ++ A EL   GI VN ++P  + S+M  NA    L    ++   + +   D+            D+A    FLAS++A +IT   + ++GG
Sbjct:   57 IQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMR-MKEQEWDDVIDTNLKGVFNCIQKVTPQMLR-QRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDM-TNALSDDLKDQMLEQIPLKRFGEDT------------DIANTVAFLASDKAKYITGQTIHVNGG 241          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: FABG6_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase (Fragments) OS=Brassica napus PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 60/204 (29.41%), Postives = 99/204 (48.53%), Query Frame = -2
Query:   99 AGYIHCDVTKEEDVESAVRLAVSWKGQLDIMFNNAXXXXXXXXXXSLNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLA-SEEAGFITAHNLVIDGG 707
            A  +  +  +E DV++ ++ AV + GQ+D++ NNA                   ++++NL G+    + A K M++ +RKG II  +S   ++G +    Y+ +K  +IG +++ A E     I VN + P  + SEM        LG+ DM+ + +       G++  GR    EDVA    FLA S  A +IT     IDGG
Sbjct:   25 AXIVLVNYAREADVDAMMKDAVDYWGQIDVIANNAGIT----------------VIALNLTGVFLCSQAATKIMMK-KRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASEMTAK-----LGE-DMEKKIL-------GTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGG 198          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHB8_PIG (Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN=HSD17B8 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 49/157 (31.21%), Postives = 78/157 (49.68%), Query Frame = -2
Query:   99 LNMEDVKFLLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFITAHNLVIDGG 569
            ++ +D   +++VNL GI    + AA+A++     GSII  SS    +G +    Y+ SK  +IGL ++ A ELG++ IR N + P  + + M     +K L K               G +  G      DVA    FLASE++G+IT  ++ + GG
Sbjct:  113 MSEDDWDKVIAVNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKV-------------VGMIPMGHLGGPPDVADVVAFLASEDSGYITGASVEVTGG 256          
BLAST of CN182848 vs. ExPASy Swiss-Prot
Match: DHB8_CALJA (Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Callithrix jacchus GN=HSD17B8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.673e-13
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = -2
Query:  126 LLSVNLNGILHGIKHAAKAMIEGQRKGSIICTSSSAAIMGGLASHAYSLSKEAIIGLARSTACELGKHGIRVNCISPHGVPSEMLVNAYRKYLGKADMKPEEVCKMVRDSGSLLRGRSASIEDVAQAALFLASEEAGFIT 545
            +++VNL G     + A +A++     GSII  SS    +G +    Y+ SK  +IGL ++ A ELG+HGIR N + P  + + M     +K + K              +G +  G     EDVA    FLASE++G+IT
Sbjct:    5 VIAVNLKGTFLVTQAAGQALVSSGCSGSIINISSIVGKVGNMGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVMNKI-------------TGMIPMGHLGDPEDVADVVAFLASEDSGYIT 131          
The following BLAST results are available for this feature:
BLAST of CN182848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
DHRS4_HUMAN2.739e-1329.80Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
LINX_PSEPA3.578e-1329.272,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
DHRS4_RABIT3.578e-1328.28Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
BDH2_HUMAN3.578e-1328.003-hydroxybutyrate dehydrogenase type 2 OS=Homo sap... [more]
YOXD_BACSU4.673e-1333.12Uncharacterized oxidoreductase yoxD OS=Bacillus su... [more]
FABG_STAES4.673e-1327.003-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ4.673e-1327.003-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG6_BRANA4.673e-1329.413-oxoacyl-[acyl-carrier-protein] reductase (Fragme... [more]
DHB8_PIG4.673e-1331.21Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN... [more]
DHB8_CALJA4.673e-1332.86Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182848 ID=CN182848; Name=CN182848; organism=Citrus sinensis; type=EST; length=762bp
CTTGCTGGTAATAGAAAATCATATGCTCTCATTTTTTATGTTCCCATACT
CAAGAACTATTGGTAGATAAAACTCATGCTACTGGTACCTGTAGTATAAC
CTCCATCAATAACAAGATTGTGTGCTGTTATAAATCCAGCTTCTTCACTT
GCTAGAAACAGCGCAGCTTGTGCCACATCTTCTATGCTTGCACTCCTCCC
ACGCAGCAAACTTCCACTGTCTCGCACCATCTTGCACACTTCTTCAGGTT
TCATATCAGCTTTCCCCAGGTACTTTCTGTAGGCATTCACAAGCATCTCT
GAAGGAACTCCATGAGGCGAGATGCAGTTCACTCGAATTCCATGCTTGCC
CAGCTCGCAGGCTGTGCTTCTTGCCAAGCCAATGATTGCCTCTTTTGACA
ACGAATAGGCATGGGATGCAAGGCCACCCATGATGGCTGCAGAGCTAGAA
GTGCAGATAATACTGCCTTTTCTCTGGCCTTCGATCATGGCCTTCGCCGC
ATGCTTGATTCCATGTAATATGCCATTCAGATTAACTGAGAGAAGAAACT
TCACATCTTCCATGTTAAGGCTTGTGATGCTGCCTCCAGAGCCAGAAATT
CCAGCATTGTTGAACATTATGTCTAACTGGCCTTTCCAGGAAACTGCAAG
CCGGACAGCTGATTCAACATCTTCTTCCTTTGTCACGTCGCAATGTATGT
ACCCGGCCGCCTATTGTGCTGGCTAGAGCAGCGCCGAGTTCATCAAGAAT
GTCTGCTATGAC
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