CN182838

Overview
NameCN182838
Unique NameCN182838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.054e-21
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   49 PPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   54 PSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   52 PSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.680e-20
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   53 PLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   48 PPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.269e-19
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   13 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINAN--VAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P CC GVRSL   A+TT DRQ+ CNCLKQA   IP  NAN  +AAGLP +CGV+IPYKISP+TDC  ++
Sbjct:   55 PSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.964e-19
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    4 VPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            V PP CC+GV++LN  A+TTPDRQ ACNC++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:   48 VIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.870e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   41 PSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P   CC GVR+LN AA TTPDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   47 PSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   49 PSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CN182838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP1_GOSHI7.054e-2163.24Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_SORBI9.212e-2167.65Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE2.052e-2066.18Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_DAUCA2.680e-2064.18Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_PYRCO5.971e-2057.35Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP3_PRUDU2.269e-1963.77Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ARATH2.964e-1959.15Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP4_LENCU3.870e-1962.32Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP_CICAR5.055e-1963.77Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP6_LENCU5.055e-1962.32Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182838 ID=CN182838; Name=CN182838; organism=Citrus sinensis; type=EST; length=443bp
GAGGTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAG
CTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCT
CGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTG
TCCGAACGAAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTTGATCTGTGTTTT
GAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAAA
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