CN182838

Overview
NameCN182838
Unique NameCN182838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.921e-18
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    4 VPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            V PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   46 VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.921e-18
Identity = 37/68 (54.41%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP CC GV++LN  A+TTPDRQ AC C++   +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   48 PPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.509e-18
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            CC G+++LN AA TTPDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:   53 CCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.277e-18
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:   49 PSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.277e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P  CCNGV++L  +A TT DR+ AC CL  A ++I G+N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:   24 PAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.279e-18
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   50 PRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.279e-18
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   50 PRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   51 PTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P  CCNGV++L  +A TT DR+ AC CL  A +SI G+N  +AAGLP +CGV+IPYKISP+T+C +V
Sbjct:   24 PVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.589e-18
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   50 PTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CN182838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP4_ARATH1.921e-1857.14Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP3_ARATH1.921e-1854.41Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP_SPIOL2.509e-1862.50Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_BETVU3.277e-1858.82Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP3_VITSX3.277e-1858.21Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTPB_BRAOT4.279e-1861.76Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_BRANA4.279e-1861.76Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPD_BRAOT5.589e-1860.29Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP5_VITSX5.589e-1858.21Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP3_BRANA5.589e-1860.29Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182838 ID=CN182838; Name=CN182838; organism=Citrus sinensis; type=EST; length=443bp
GAGGTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAG
CTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCT
CGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTG
TCCGAACGAAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTTGATCTGTGTTTT
GAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAAA
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