CN182838

Overview
NameCN182838
Unique NameCN182838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   51 PTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:   50 CCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.533e-18
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC GV +LN  ARTTPDRQ AC CL  A  + P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   50 PRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   46 PLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   50 CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC GV  LN  ARTTPDRQ AC CL+ A R++ P +NA  AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   50 PGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   50 CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.623e-17
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P P CC GV+ LNGAARTT DR+AACNCLK +  SI G+     A LP +CGV +PY IS +T+C+ +R
Sbjct:   49 PSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.179e-17
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  C G+RSL  AAR   DRQAAC C+K     I  IN  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   53 PPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   50 PPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of CN182838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP4_ORYSJ9.533e-1857.35Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLLC9.533e-1863.08Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_BRANA9.533e-1860.29Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP2_TOBAC2.124e-1757.97Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLLC2.124e-1760.00Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTPA_BRAOT2.774e-1756.52Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_SOLPN2.774e-1760.00Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_LENCU3.623e-1756.52Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP6_GOSHI6.179e-1760.29Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLT41_HORVU8.070e-1755.07Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182838 ID=CN182838; Name=CN182838; organism=Citrus sinensis; type=EST; length=443bp
GAGGTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAG
CTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCT
CGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTG
TCCGAACGAAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTTGATCTGTGTTTT
GAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAAA
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