CN182838

Overview
NameCN182838
Unique NameCN182838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            PP  CC+GV+ L GAA++T D+QAAC CLK    SI GIN    +G+P +CGVS+P+ IS +TDC++V
Sbjct:   50 PPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   50 PPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   50 PPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.348e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   50 CCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.067e-16
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    4 VPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            V PP CC GV+++  ++RTT DR+A C+CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:   22 VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.231e-16
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 204
            P P CCNGVR LNG   TT DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   51 PGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   C +GVRSLN AARTT DR+AACNC LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:   25 PSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CC GV+ L G A+TT DRQAAC CLK A  S   ++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   50 CCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   19 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   53 CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.165e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CCNGVR L+  A+++ DRQ  CNCLK   R I  +N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   49 PSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
The following BLAST results are available for this feature:
BLAST of CN182838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP3_HORVU1.054e-1654.41Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLT43_HORVU1.054e-1655.07Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.054e-1655.07Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP2_SOLPN2.348e-1658.46Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_PHAAU3.067e-1652.17Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP7_ARATH5.231e-1656.52Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP_ELECO8.923e-1657.97Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP2_SOLCI8.923e-1658.46Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP2_ARATH1.165e-1557.58Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_HORVU1.165e-1551.47Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182838 ID=CN182838; Name=CN182838; organism=Citrus sinensis; type=EST; length=443bp
GAGGTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAG
CTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCT
CGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTG
TCCGAACGAAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTTGATCTGTGTTTT
GAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAAA
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