CN182838

Overview
NameCN182838
Unique NameCN182838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:   26 PPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P   CC GV+ L  AA TT DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   49 PTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            PP  CC GVRSL  AA+T  DR+ ACNC+K A +    +N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:   26 PPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.288e-14
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  +N + A  +P +CGV++PY IS N DCSRV
Sbjct:   46 PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.198e-14
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P  CC GV+SL   A+TTPDR+  C CLK A + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   49 PSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P P CCNG+ SL  AA    DRQ ACNCLK    +IPGIN + A  LP +CGV+I    S   DC+ +
Sbjct:   51 PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:   50 PSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   53 PSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.174e-13
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 PPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 210
            P   CC+GVR+LNG A ++ DR+ AC+CLK    S   +N   AA +P +CGVS+ + IS + DCS++
Sbjct:   53 PSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CN182838 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.741e-11
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 PPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 213
            P  CC+GV+ LN  ARTT DRQ AC C++ A R++   +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   50 PRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CN182838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NLTP_AMACA9.865e-1550.72Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP3_LENCU9.865e-1553.62Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_AMAHP9.865e-1550.72Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_WHEAT1.288e-1451.47Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPC_ARATH2.198e-1452.24Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTPB_ARATH1.425e-1350.00Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP8_HORVU1.425e-1352.17Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_ORYSJ3.174e-1345.59Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI3.174e-1345.59Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP5_ARATH1.741e-1150.72Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0003B14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182838 ID=CN182838; Name=CN182838; organism=Citrus sinensis; type=EST; length=443bp
GAGGTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGC
CGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAG
CTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCT
CGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTG
CTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATG
ATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTG
TCCGAACGAAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTTGATCTGTGTTTT
GAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAAA
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