EY666168

Overview
NameEY666168
Unique NameEY666168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: UBX2B_CHICK (UBX domain-containing protein 2B OS=Gallus gallus GN=UBXN2B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 58/221 (26.24%), Postives = 98/221 (44.34%), Query Frame = 2
Query:   62 AVRDKKPAKPSSSRAGGIRTLSDLNRRSGPXXXXXXXAPQEYYTG-GEKSGMLVQDPSKGDPNDVDAIFNQAKELGAVEGPLEHLXXXXXXXX----FTGTARLLSGETVPSAPQ---QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPAN 697
            ++R  KP     S + G++  S  + R            Q +Y+G  E  G+ +   S      V  +F +AKE GAV  PL+              F+G    L   +   +     + + +   +  W NGF+++DG LR   DP NA FLES+K+ E P +L+       V++++   ++ +  +P      F G G+ LGS +     P + STP++
Sbjct:   56 SLRSDKPTTTKMSNSKGLKIDSFRSLRKPERSMSDDKENQRFYSGDSEYRGLQIWGASNNPSKIVAELFKEAKEHGAV--PLDEASRTSGDFSKAKSFSGGGYRLGDSSQKHSEYIYGENQDVQILLKLWRNGFSLDDGELRSYSDPINAQFLESVKRGEIPVDLQRLVHGGQVNLDMEDHQEQEYVKPRLRFKAFSGEGQKLGSLT-----PEIVSTPSS 269          
BLAST of EY666168 vs. ExPASy Swiss-Prot
Match: NSF1C_CHICK (NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 55/178 (30.90%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  179 QEYYTGG-EKSGM-LVQDPSKGDPND-VDAIFNQAKELGAV--EGPLEHLXXXXXXXXFTGTARLLSGETVPSAPQQPEPIV-----HNIV--------FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRRDVKCPEPEKHHVPFQGVGRTLGSSS 655
            Q +Y GG E+SG  +V  P K  PN+ V+ +F  AKE GAV  +   +          F G      G  + + P++    V     HN V         W  GF+++ G LR   DP NA FL+ I++ E P EL    +   V++++   RD +  +P+     F G G+ LGS++
Sbjct:   91 QRFYAGGSERSGQQIVGPPRKKSPNELVEDLFKGAKEHGAVAVDRTAKSSGESSKPKPFAG-----GGYRLGATPEEESAYVAGERRHNSVQDVHVVLKLWKTGFSLDSGELRSYQDPSNAQFLDDIRRGEVPAELRRLARGGQVNLDMEDHRDEEYVKPKSVFKAFTGEGQKLGSTA 263          
The following BLAST results are available for this feature:
BLAST of EY666168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
UBX2B_CHICK5.397e-1126.24UBX domain-containing protein 2B OS=Gallus gallus ... [more]
NSF1C_CHICK9.206e-1130.90NSFL1 cofactor p47 OS=Gallus gallus GN=NSFL1C PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-014-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666168 ID=EY666168; Name=EY666168; organism=Citrus sinensis; type=EST; length=868bp
TGCACGCGGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGAAAAACT
TCCAATCCATGGCTGTCCGTGACAAAAAACCAGCAAAACCATCAAGCAGT
CGGGCCGGCGGTATACGCACGCTCTCCGATCTGAACCGGCGGTCGGGACC
CGACTCCGACTCAGACGATGATGCACCTCAAGAGTATTACACTGGTGGCG
AGAAGAGTGGTATGCTTGTCCAAGATCCTTCCAAGGGCGATCCTAATGAT
GTGGATGCGATTTTCAATCAGGCTAAGGAACTGGGAGCTGTAGAAGGGCC
GCTTGAGCATCTCAGTCCATCTTCAAGCTCAAGAAGCTTTACTGGAACTG
CTAGATTACTCTCGGGGGAAACTGTACCGTCTGCACCTCAGCAGCCTGAG
CCCATTGTTCATAACATTGTTTTCTGGGCCAATGGTTTCACTGTTAATGA
TGGTCCCTTGAGGAGGTTGGATGATCCTGAAAATGCATCTTTCTTAGAGA
GCATCAAAAAGTCTGAGTGTCCAAAAGAGCTAGAGCCTGCTGATAAAAGG
TCCTCAGTTCATGTCAATCTGATAAGGAGGGATGTGAAATGCCCTGAACC
AGAGAAGCACCATGTTCCATTTCAGGGTGTTGGAAGAACACTGGGTAGCA
GCAGTACTGCAGCTTCTGAACCCACTGTTGATTCCACCCCGGCCAACACC
TGCTTCCTCCTCTTCTGAGGGTCTGGGTGTTGAATGGAAAACCTTCCGTC
GAAACTCAGTTTCAAACCCGGGTGGGGGACGGGAACCCCGCTGGATACCA
ACTTTCAATCTTTCCCCCCCAAATCGGCGACATTCGTTTCCTTCTTTGGA
TGGCATTTTACGGCCGGG
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