CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            YVG     +R LF++AR+ +P I+F DE+DA+  KR  +     ++ LNQLL+ELDG  +  G+ +IGATN P+ +D+A+ RPGRF K++ V LP    R  IL+   +K  + D+VD   IA+
Sbjct:  354 YVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIAR 477          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  +PCI+F DE+DA+  +RG     G    E+ LNQLL E+DG +   GV VI ATNR D++D A+LRPGRF + + V +P    R  ILE  A+ K ++  V L TIA+
Sbjct:  246 FVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIAR 372          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  +PCI+F DE+DA+  +RG     G    E+ LNQLL E+DG +   GV VI ATNR D++D A+LRPGRF + + V +P    R  ILE  A+ K ++  V L TIA+
Sbjct:  246 FVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIAR 372          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.952e-21
Identity = 66/204 (32.35%), Postives = 102/204 (50.00%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSE----LQIQRYKTLS 596
            L  +VG     VR LF+ AR  +PCILF DE+DA+  KRG+    G    E  LNQLL+E+DG +    V ++  TNRPD++D A+LRPGRF + +++  P    R  I +   R   +D +++     + K    L+                   LI+++  SD     I   HFEQA+ ++   + +    LQ +  KT++
Sbjct:  377 LEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALE-----KDKLARKLASLTPGFSGADVANVCNEAALIAARHLSD----AINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVA 571          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.039e-20
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  +PC++F DE+DA+  +RG     G    E+ LNQLL E+DG +   G+ VI ATNRPDV+D A+LRPGRF + + V  P    R LIL   A+ K + + V L  IA+
Sbjct:  284 FVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIAR 410          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG +    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  ++D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQ--LSEGFSG 341          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG +    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  ++D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQ--LSEGFSG 341          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG +    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  ++D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQ--LSEGFSG 341          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG +    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  ++D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQ--LSEGFSG 341          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG +    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  ++D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQ--LSEGFSG 341          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
YME1_YEAST7.952e-2142.74Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
FTSH_PORPU7.952e-2144.88Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE7.952e-2144.88Cell division protease ftsH homolog OS=Porphyra ye... [more]
AFG32_MOUSE7.952e-2132.35AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
FTSH2_SYNY31.039e-2044.09Cell division protease ftsH homolog 2 OS=Synechocy... [more]
PSMR_SULIY1.356e-2041.61Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.356e-2041.61Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.356e-2041.61Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.356e-2041.61Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.356e-2041.61Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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