CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.314e-20
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + KY+GE    VR LF  A+  +P I+F DE+DA+   R +    G   V+R L QLL  +DG + R  V +IGATNR D++D A+LRPGRF +++ +PLP  + R  IL+   R   + + VDL  +A+
Sbjct:  224 VQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVAR 353          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            + K++GE    VR LF  AR  +P I+F DE+DA+  +R ++   G   V+R L QLL E+DG D    + VI ATNR D++D A+LRPGRF + + +PLP  + R  I +   R   + + VDL  +A  K  E  SG
Sbjct:  250 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLA--KITEGASG 386          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  SPCI+F DE+DA+  +RG   GG   ER   LNQLL+E+DG   R GV +I ATNRPD++D A+LRPGRF + + V  P    R  +L   ++ KP+    DL  +A+
Sbjct:  236 FVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAK 362          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  SPCI+F DE+DA+  +RG   GG   ER   LNQLL+E+DG   R GV +I ATNRPD++D A+LRPGRF + + V  P    R  +L   ++ KP+    DL  +A+
Sbjct:  236 FVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAK 362          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  SPCI+F DE+DA+  +RG   GG   ER   LNQLL+E+DG   R GV +I ATNRPD++D A+LRPGRF + + V  P    R  +L   ++ KP+    DL  +A+
Sbjct:  236 FVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAK 362          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA 383
            +  +VG      R LF++A+  SPCI+F DE+DA+   RG     G    E+ LNQ+L E+DG     GV VI ATNRP+++D A+LRPGRF + + V LP    R  IL+  +R K +D  V L  IA
Sbjct:  294 IEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIA 422          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + KY+GE    VR LF  A+  +P I+F DE+DA+   R      G   V+R L QLL E+DG D R  V ++ ATNR D++DRA+LRPGRF +++ +PLP    R  IL+   +   I + V+L  +++
Sbjct:  224 VQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSR 353          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F +A+  +PC++F DE+DA+  +RG   GG   ER   LNQ+L+E+DG     GV VI ATNRPDV+D A+ RPGRF + + V LP    R  IL+   RK  +   VD  T+A+
Sbjct:  224 FVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLAR 350          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG--KEGGWVVERLLNQLLIELDGAD----KRKG---------------VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLIS-SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTL 593
            +VG+SE  +  +F +AR  +P ILF DE+D++   R   K G  V ER+L+ LL ELDG      +R+G               V +I ATNRPDV+D A+LRPGR  K++Y+P P    R  IL+   +  PI   V L         ENL+                   L++  ++  D T  T+K  HF ++L  + PS+S   +  Y+ L
Sbjct:  538 FVGDSEKVLSQIFRQARASTPAILFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSL---------ENLAAETCFFSGADLRNLCTEAALLALQENGLDAT--TVKQEHFLKSLKTVKPSLSCKDLALYENL 741          

HSP 2 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCS---PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            GE+E  VR +F RAR  +   P +LF DE+DAL  +RG        R++ Q+L  LDGA   + V V+GATNRPD +D A+ RPGRF + + +  PT  +R  IL+ +  K PI   VDL  +A+
Sbjct:  276 GETEENVRRVFQRARELASRGPSLLFLDEMDALCPQRGSRAP--ESRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAE 398          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A++ +PCI+F DE+DA+  +RG     G    E+ +NQLL E+DG     GV V+ ATNRPDV+D A+LRPGRF + + V  P    R  IL+  +R K +   VD   IA+
Sbjct:  326 FVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIAR 452          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
PSMR_METHJ2.314e-2041.54Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METKA3.022e-2041.01Proteasome-activating nucleotidase OS=Methanopyrus... [more]
FTSH_MYCTU3.022e-2044.88Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA3.022e-2044.88Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO3.022e-2044.88Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH6_ARATH3.946e-2043.41Cell division protease ftsH homolog 6, chloroplast... [more]
PSMR_METMJ5.154e-2040.77Proteasome-activating nucleotidase OS=Methanoculle... [more]
FTSH1_HAEIN5.154e-2044.09Cell division protease ftsH homolog 1 OS=Haemophil... [more]
SPA5L_HUMAN6.731e-2033.49Spermatogenesis-associated protein 5-like protein ... [more]
FTSH_TOBAC6.731e-2043.31Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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