CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 69/206 (33.50%), Postives = 100/206 (48.54%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK--RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK--PIDDSVDLHTIAQSKFCENLSG---XXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETF 605
            +KYVGE E  VR LFS AR   P I+F DEVD+L  +R +       RL  + LIE DG        V V+GATNRP  +D AVLR  RF K +YV LP  + R ++L+ L  K+  P+ +         S+  E  SG                    + + + ++S++    +K + F  +L KI  SVS   ++ Y   ++ F
Sbjct:  397 SKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEK---ELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMR--NMKYSDFLGSLKKIKCSVSHSTLESYIRWNQDF 595          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 67/207 (32.37%), Postives = 97/207 (46.86%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGA-------DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLIS------SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYK 587
            +KY GESE  VR LF  AR  +P  +F DE+D++ ++RG  E      R+  +LL+++DG        D  K V V+ ATN P  +D A+ R  R  K +Y+PLP+   R  +L    R+  + D VDL  IA+    E  SG                 ++           S D       +  FE AL K+S SVS   I++Y+
Sbjct:  281 SKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEK--MEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDEMHMPTTMEDFEIALKKVSKSVSAADIEKYE 483          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 67/216 (31.02%), Postives = 104/216 (48.15%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGA-------DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKL--ISSKS----SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 614
            +KY GESE  VR LF  AR  +P  +F DE+D++ ++RG  +      R+ ++LLI++DG        D  K V V+ ATN P  +D A+ R  R  K +Y+PLPT   R  +L+   R+  +D  + L  IA+    E  SG                 ++  +S +     S +     +    FE AL KI+ SVS   +++Y+     F +A
Sbjct:  279 SKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEK--IEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGSA 490          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 67/216 (31.02%), Postives = 104/216 (48.15%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGA-------DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKL--ISSKS----SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 614
            +KY GESE  VR LF  AR  +P  +F DE+D++ ++RG  +      R+ ++LLI++DG        D  K V V+ ATN P  +D A+ R  R  K +Y+PLPT   R  +L+   R+  +D  + L  IA+    E  SG                 ++  +S +     S +     +    FE AL KI+ SVS   +++Y+     F +A
Sbjct:  279 SKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEK--IEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFGSA 490          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 46/129 (35.66%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   39 VRTLFSRARTCSPCILFFDEVDALTTKRGKE----GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            VR+LF  AR  +PCI++ DE+DA+  KR            E+ LNQLL+E+DG      V V+ +TNR D++D A++RPGR  + +++ LPT  ER  I E   +   +  S   ++   ++     SG
Sbjct:  390 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 518          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 317
            LNKYVGESE  +R LF+ A              I+ FDE+DA+  +RG   G   V + ++NQLL ++DG ++   + VIG TNRPD++D A+LRPGR    + + L  PDE+G
Sbjct:  291 LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGL--PDEKG 402          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 317
            LNKYVGESE  +R LF+ A              I+ FDE+DA+  +RG   G   V + ++NQLL ++DG ++   + VIG TNRPD++D A+LRPGR    + + L  PDE+G
Sbjct:  291 LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGL--PDEKG 402          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 317
            LNKYVGESE  +R LF+ A              I+ FDE+DA+  +RG   G   V + ++NQLL ++DG ++   + VIG TNRPD++D A+LRPGR    + + L  PDE+G
Sbjct:  291 LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGL--PDEKG 402          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 317
            LNKYVGESE  +R LF+ A              I+ FDE+DA+  +RG   G   V + ++NQLL ++DG ++   + VIG TNRPD++D A+LRPGR    + + L  PDE+G
Sbjct:  291 LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGL--PDEKG 402          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 317
            LNKYVGESE  +R LF+ A              I+ FDE+DA+  +RG   G   V + ++NQLL ++DG ++   + VIG TNRPD++D A+LRPGR    + + L  PDE+G
Sbjct:  291 LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGL--PDEKG 402          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
SPAST_XENLA4.515e-1633.50Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
KTNA1_CHICK4.515e-1632.37Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KATL1_OTOGA4.515e-1631.02Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN4.515e-1631.02Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPG7_HUMAN5.897e-1635.66Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
NSF_RAT5.897e-1642.98Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_PONAB5.897e-1642.98Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE5.897e-1642.98Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN5.897e-1642.98Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR5.897e-1642.98Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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