CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDAL-TTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            + ++VG+    +  L+  A   +P ++F DE+DA+   +R +     V  ++N LL E+DG ++  GV  IGATN P+++D A+    RF + +   LP  DER ++LE      P+D  VD       K  + +SG
Sbjct:  194 IGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLD--VDFSVDKLVKLTKGMSG 326          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  147 ERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            E+ LNQ+L+E+DG     GV VI ATNRPDV+D A+ RPGRF + + V LP    R  IL+   RK  +   VD  T+A+
Sbjct:   17 EQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLAR 96          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQS 389
            ++K+ GES   V  +FS A    PCI+F DE+D+   +R      V   L  + +   DG      V +IGATNR + +D A LR  R  K   V LP  D+R  IL  L +   +D D  DL  IA +
Sbjct:  163 MDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADN 289          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTC-------SPC-ILFFDEVDALTTKR-GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK----KPIDDSVDLHTIA 383
            NK+VG SE  +R +F  A+         SP  ++  DE+DA+   R G +G  V + ++NQ L E+DG +    +  IG TNR +++D A +R GRFG  + + LP  + R  I +   +K      + D VD+  +A
Sbjct:  644 NKWVGGSESNIRAIFKPAKDAWKKHGDKSPVYMVVIDEIDAMLPSRSGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLA 781          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQS 389
            +K+ GES   V  LF+ AR   P I+F DE+D    +R +     + ++  + +   DG    +  V V+GATNRP  +D A+ R  R  K+  +PLP  ++R  ILE   +K P++ + D + +  +
Sbjct:  163 DKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNA 288          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  153 LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILE 329
            LL+QLLIELDG   R GV + GATNRP+V+D A+LRPGRF K++ V LP   +R  IL+
Sbjct: 1154 LLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQ 1212          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            + ++VG+    +  L+  A   +P ++F DE+DA+   R  +     V  ++N LL E+DG ++  GV  IGATN P+++D+A+    RF + +   LP  +ER L+LE      P+   VD       K    +SG
Sbjct:  194 IGEHVGDGARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPL--KVDFPVDKLVKLTREMSG 326          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 53/180 (29.44%), Postives = 84/180 (46.67%), Query Frame = 3
Query:    9 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSK 545
            +K+ GES+     +FS A+   P I+F DE+D+    R          +  Q +   DG +     + V+GATNRP  +D A+LR  R      VP+P   +R  IL  + R + I+++V+L  IAQ+   E LSG                  + S  S + + P  ++ + FE A+ K
Sbjct:  155 DKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQA--AEGLSGSDLKEVCRLALLARAKATVASGGSVNQLLP--LEQSDFESAVHK 328          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERL----------------------LNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDS 362
            G +   V  LF + +  SPCIL+ DE+D++  +R +E    +E+L                      L Q LI +DG  KR  + +IGATNR + +D A++RPGRF + +    P  +ER  IL    R  K  +DD+
Sbjct:  420 GVANARVDDLFKQIQNISPCILYIDEIDSIAERR-EEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDT 556          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
PRS2_METTM3.029e-1232.12Putative 26S protease regulatory subunit homolog M... [more]
FTSH2_HAEIN3.029e-1247.50Cell division protease ftsH homolog 2 OS=Haemophil... [more]
MSP1_YEAST6.747e-1236.43Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
YR476_MIMIV1.151e-1133.33Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
YJNA_SCHPO1.503e-1132.03Uncharacterized AAA domain-containing protein C24B... [more]
FTSH_CHLVU1.503e-1159.32Cell division protease ftsH homolog OS=Chlorella v... [more]
PRS2_METTH1.963e-1131.39Putative 26S protease regulatory subunit homolog M... [more]
MSP1_CAEEL1.963e-1129.44Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
YCF2_MESVI2.564e-1133.33Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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