CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 60/127 (47.24%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F  AR  +PCI+F DE+DA+  +RG   GG   ER   LNQ+L+E+DG D  +GV +I ATNRPDV+D A+LRPGRF + + V LP    R  IL+   RK P+ + VD   IA+
Sbjct:  225 FVGVGASRVRDMFEHARKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIAR 351          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.472e-22
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            + K++GE    VR +F  A+  SPCI+F DE+DA+ +KR +    G   V+R L QLL E+DG D R  V +I ATNRPD++D A+LRPGRF +++ +  P  D R  I +    K  I  SVDL  IA  K  EN+ G
Sbjct:  219 VKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIA--KMAENMVG 354          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.228e-22
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + KY+GE    VR +F  A+  SP I+F DE+DA+  KR K    G   V+R L QLL ELDG + R  V ++ ATNRPD++D A+LRPGRF + + VPLP  D R  IL+       + + VD+  +A+
Sbjct:  222 VRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLAR 351          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            + KY+GE    VR +F  A+  +P I+F DE+DA+  +R      G   V+R + QLL ELDG D R  V VIGATNR D++D A+LRPGRF +++ VPLPT + R  I +   RK  + + VD   +A  +  E  SG
Sbjct:  212 VQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELA--RITEGASG 348          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F  +R  +PCI+F DE+DA+  +RG   GG   ER   LNQ+L+E+DG D  +G+ +I ATNRPDV+D A+LRPGRF + ++V LP    R  I++   +K P+ ++VD   IA+
Sbjct:  225 FVGVGASRVRDMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIAR 351          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA 383
            +VG     VR LF  A+  +PC++F DE+DA+  +RG   GG   ER   LNQLL+E+DG    +G+ +I ATNR D++D A+LRPGRF + + V  P    R  +L+  AR KP+D++V+L +IA
Sbjct:  234 FVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIA 359          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + K++GE    V+ +F  A+  +P I+F DE+DA+  KR      G   V+R L QLL E+DG D R  V +IGATNRPD++D A+LRPGRF +++ VP P    R  IL+   RK  + + V+L  IA+
Sbjct:  241 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 370          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 3
Query:   18 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            VG     VR LF++A+  +PCI+F DE+D++ +KRG+       VVE+ LNQLL E+DG   R GV V+ ATNR DV+D A+LRPGRF + + + LP   ER  IL+  A+ K +   + L  +A+
Sbjct:  302 VGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAK 427          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.227e-21
Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LFS A+ CSPCI+F DE+DA+   R  +    ++  LNQ+L+ELDG  + +G+ V+ ATN P+ +D+A++RPGRF + + VP P  + R  ILE+   K    + VDL  IA+
Sbjct:  300 FVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIAR 423          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + KY+GE    V  LF  A+  +P I+F DE+DA+  KR  E   G   V R L QLL E+DG D R  V VI ATNRPD++D A+LRPGRF +L+ VPLP  + R  IL+   R+  +  +VDL  IA+
Sbjct:  211 VRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAE 339          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
FTSH_BUCAP1.893e-2247.24Cell division protease ftsH OS=Buchnera aphidicola... [more]
PSMR_METVS2.472e-2244.60Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METTH3.228e-2243.85Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_ARCFU7.192e-2243.17Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
FTSH_BUCBP7.192e-2244.09Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BACSU7.192e-2244.44Cell division protease ftsH homolog OS=Bacillus su... [more]
PSMR_METJA1.227e-2143.08Proteasome-activating nucleotidase OS=Methanocaldo... [more]
FTSH_MYCPN1.227e-2144.44Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH4_ARATH1.227e-2142.74Cell division protease ftsH homolog 4, mitochondri... [more]
PSMR_PYRAB1.602e-2146.92Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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