CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR LF +A+  SPCI+F DE+DA+  +RG   GG   ER   LNQLL+E+DG   R GV +I ATNRPD++D A+LRPGRF + + V  P    R  +L   ++ KPI D  DL  +A+
Sbjct:  236 FVGVGASRVRDLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAK 362          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 58/127 (45.67%), Postives = 79/127 (62.20%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F  +R  +PCI+F DE+DA+  +RG   GG   ER   LNQ+L+E+DG D  +G+ +I ATNRPDV+D A+LRPGRF + + V LP    R  IL+   RK P+   VD   IA+
Sbjct:  225 FVGVGASRVRDMFEHSRKSAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLSKDVDPMIIAR 351          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.093e-21
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   12 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 413
            K+VGE    VR LF  A+  +P I+F DE+DA+  KR   G  G   ++R L QLL ELDG D    V +I ATNR D++D A+LRPGRF +++ VPLP    R  I     +K  I+D+++L  ++Q    E  SG
Sbjct:  207 KFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQ--LTEGFSG 341          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.093e-21
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            + KY+GE    V  LF  A+  +P I+F DE+DA+  KR  E   G   V R L QLL E+DG D R  V VI ATNRPD++D A+LRPGRF +L+ VPLP  + R  IL+   R+  +   VDL  IA+
Sbjct:  211 VRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAE 339          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.093e-21
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR+LF  A+  +P I+F DE+DA+  +RG     G    E+ LNQLLIE+DG +  +G+ VI ATNR DV+D A+LRPGRF + + V  P    R  IL+  A+ KP+ + VDL  +AQ
Sbjct:  260 FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQ 386          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.093e-21
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR+LF  A+  +P I+F DE+DA+  +RG     G    E+ LNQLLIE+DG +  +G+ VI ATNR DV+D A+LRPGRF + + V  P    R  IL+  A+ KP+ + VDL  +AQ
Sbjct:  260 FVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQ 386          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.733e-21
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 3
Query:   18 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            VG     VR LF++A+  +PCI+F DE+D++ +KRG+       VVE+ LNQLL E+DG   R GV V+ ATNR DV+D A+LRPGRF + + + LP   ER  IL+  A  K +   + L  +A+
Sbjct:  305 VGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAK 430          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.733e-21
Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSE----LQIQRYKTLS 596
            L  +VG     VR LF+ AR  +PCILF DE+DA+  KRG+    G    E  LNQLL+E+DG +    V ++  TNRPD++D A+LRPGRF + +++  P    R  I +   R   +D      T+ + K    L+                   LI+++  SD    +I   HFEQA+ ++   + +    LQ +  KT++
Sbjct:  378 LEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDS-----TLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSD----SINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVA 572          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F +A+  +PCI+F DE+DA+  +RG   GG   ER   LNQ+L+E+DG +  +G+ VI ATNRPDV+D A+LRPGRF + + V LP    R  IL+   R+ P+   +D   IA+
Sbjct:  225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 351          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 3
Query:   15 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            +VG     VR +F +A+  +PCI+F DE+DA+  +RG   GG   ER   LNQ+L+E+DG +  +G+ VI ATNRPDV+D A+LRPGRF + + V LP    R  IL+   R+ P+   +D   IA+
Sbjct:  225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIAR 351          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
FTSH_MYCLE1.602e-2146.46Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_BUCAI1.602e-2145.67Cell division protease ftsH OS=Buchnera aphidicola... [more]
PSMR_SULSO2.093e-2143.07Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_PYRHO2.093e-2146.92Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
FTSH_STRR62.093e-2144.88Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN2.093e-2144.88Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_MYCGE2.733e-2144.44Cell division protease ftsH homolog OS=Mycoplasma ... [more]
AFG32_HUMAN2.733e-2132.84AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH_SHIFL3.569e-2144.09Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY3.569e-2144.09Cell division protease ftsH OS=Salmonella typhimur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
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