CN189215

Overview
NameCN189215
Unique NameCN189215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189215 vs. ExPASy Swiss-Prot
Match: U533_CAEEL (UPF0533 protein C56C10.7 OS=Caenorhabditis elegans GN=C56C10.7 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 73/228 (32.02%), Postives = 110/228 (48.25%), Query Frame = 1
Query:   58 SSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVK----EITFLEACIENHTKSNLY 726
            +S+     LA RVMRL RP          DP D                  P    ++   K S+++  SR         + +   L+ PQ F  IYLGETF  Y+++ N S   V  V +K E+QT  QR++L      + +ES +  G+   ++ H+VKE+G H L+C+  Y    GE  Y  +FFKF VS P+ V+TK    +    +  +LEA IEN + +N++
Sbjct:    6 ASSSSQQLLALRVMRLARPKFAPVDGFSHDPVD------------------PTGFGELLAGKVSEISKESR-------QDLPIGEYLIAPQMFENIYLGETFTFYVNVVNESEKTVSSVSLKCELQTSTQRVVLPCSVQDATIESSKCEGQ---VISHEVKEIGQHILICSVNYKTSNGENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNANMF 205          
BLAST of CN189215 vs. ExPASy Swiss-Prot
Match: U533_CAEBR (UPF0533 protein CBG04321 OS=Caenorhabditis briggsae GN=CBG04321 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 75/229 (32.75%), Postives = 113/229 (49.34%), Query Frame = 1
Query:   55 MSSTPGTHSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILL-LDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVVK----EITFLEACIENHTKSNLY 726
            +S++     LA RVMRL RP          DP D                  P    ++   K ++++  SR   HD    + +   L+ PQ F  IYLGETF  Y+++ N S   V +V +K E+QT  QR++L        +ES +  G+   ++ H+VKE+G H L+C+  Y    GE  Y  +FFKF VS P+ V+TK    +    +  +LEA IEN + SN++
Sbjct:    5 ISNSSTQQLLALRVMRLARPKFAPLDGFSHDPVD------------------PTGFGELLAGKVAEISKESR---HD----LPIGEYLIAPQMFENIYLGETFTFYVNVVNESESNVVNVSLKCELQTSTQRVVLPCSVQDVTIESTKCDGQ---VISHEVKEIGQHILICSVNYKTLSGENMYFRKFFKFPVSKPIDVKTKFYSAEDNANQDVYLEAQIENTSNSNMF 205          
The following BLAST results are available for this feature:
BLAST of CN189215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
U533_CAEEL1.862e-2432.02UPF0533 protein C56C10.7 OS=Caenorhabditis elegans... [more]
U533_CAEBR5.418e-2432.75UPF0533 protein CBG04321 OS=Caenorhabditis briggsa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189215 ID=CN189215; Name=CN189215; organism=Citrus sinensis; type=EST; length=728bp
GAGGCGTCAATTCATTCAGATTGAGTAAAGAGTGGTTGAGTGAGGGGACT
GAGGATGAGCTCGACGCCAGGAACACACTCGCTAGCCTTCAGAGTGATGA
GGCTATGTAGGCCGTCGTTACACGTGGAGCCTCCTCTTCGCGTAGACCCC
ACCGATCTCTTCATCGGCGAGGACATCTTCGACGATCCAATCGCCGCTTC
CAACCTCCCTCCACTAATATCTAGCGACGTCACCACCAACAAATCCTCCG
ATCTCACCTATCGCTCTAGATTCCTCCTCCACGACTCCGCTGATTCCATC
GGCCTCTCCGGCCTCCTCGTCCTCCCCCAAGCCTTCGGGGCTATTTATCT
GGGAGAGACGTTTTGTAGCTACATTAGTATCAACAACAGTTCCACTTTAG
AAGTTAGAGATGTTGTTATTAAGGCAGAAATTCAAACGGATAAGCAGAGG
ATCCTCCTTTTGGATACGTCAAAATCACCTGTTGAATCAATACGAGCGGG
CGGACGTTATGATTTCATCGTAGAACATGATGTCAAAGAACTCGGAGCTC
ATACGCTTGTGTGCACGGCATTGTATAGTGATGGTGAGGGAGAGCGGAAA
TATCTTCCACAGTTTTTCAAGTTCATTGTCTCCAATCCACTTTCAGTTCG
GACCAAGGTCCGTGTTGTTAAGGAAATAACATTTTTAGAGGCATGCATTG
AGAATCATACAAAATCAAACCTTTATAT
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