CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOPS (Phosphoglycerate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I +G+MGLD+G      ++EA+   KT+IWNG MGVFE+  F  G+ A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK L G+ A +D
Sbjct:  290 IAEGFMGLDIGPKTEAIYAEAIKDAKTVIWNGPMGVFEFENFNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOPE (Phosphoglycerate kinase OS=Clostridium perfringens GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I +G+MGLD+G      ++EA+   KT+IWNG MGVFE+  F  G+ A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK L G+ A +D
Sbjct:  290 IAEGFMGLDIGPKTEAIYAEAIKDAKTVIWNGPMGVFEFENFNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOP1 (Phosphoglycerate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I +G+MGLD+G      ++EA+   KT+IWNG MGVFE+  F  G+ A+AK +AE      TTIIGGGDS AAV  +G  DKMSHISTGGGASLE LEGK L G+ A +D
Sbjct:  290 IAEGFMGLDIGPKTEAIYAEAIKDAKTVIWNGPMGVFEFENFNKGTIAVAKAMAEADA---TTIIGGGDSAAAVNILGFGDKMSHISTGGGASLEFLEGKVLPGIAALND 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = -2
Query:  321 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDDA 653
            +PDG MGLDVG ++ K F+ A+   KTI+WNG  GVFE+ KFA G++++  ++ + +  G  TIIGGGD+  A +K    DK+SH+STGGGASLELLEGK L GV A   A
Sbjct:  306 VPDGHMGLDVGPESSKIFAAAIQRAKTIVWNGPAGVFEFDKFATGTKSLMDEVVKATAAGAITIIGGGDTATAAKKYNTEDKVSHVSTGGGASLELLEGKVLPGVDALSPA 416          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_ACHLI (Phosphoglycerate kinase OS=Acholeplasma laidlawii (strain PG-8A) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  327 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFD 656
            AIP   MGLD+G   +  F E + + KT++WNG  GVFE  KFA G+  + K LA+L GK + TI+GGGDS AAV K GL DK SHISTGGGASLE LEGK L GV   D
Sbjct:  289 AIPADEMGLDIGPKTVARFKEIIASAKTVVWNGPQGVFEMEKFANGTLEVTKALADLHGKAI-TIVGGGDSAAAVAKFGLEDKFSHISTGGGASLEYLEGKVLPGVELVD 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PELLD (Phosphoglycerate kinase OS=Pelodictyon luteolum (strain DSM 273) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = -2
Query:  327 MGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFD 638
            MG+D+G    +++ + +   KT++WNG MGVFE   FA G+ A+A+ LA  + KG TTIIGGGDS AAV K GLADKM+HISTGGGASLE LEGK L G+ A +
Sbjct:  293 MGVDIGPKTAETYRKEILGAKTVLWNGPMGVFEIDNFAGGTIAVAEALAAATAKGATTIIGGGDSAAAVAKAGLADKMTHISTGGGASLEFLEGKELPGIAALN 396          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOK5 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I DG+MG+D+G    K +++A+  +KTIIWNG MGVFE+  FA G+ A+AK +AE    G  TIIGGGDS AA+ ++G  DKM+HISTGGGASLE L G+ L G+ A ++
Sbjct:  291 IKDGYMGMDIGPKTAKVYADAIKDSKTIIWNGPMGVFEFKNFAKGTFAVAKAMAE---SGAITIIGGGDSAAAINQLGFGDKMTHISTGGGASLEFLGGEELPGISALNN 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOK1 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.157e-27
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I DG+MG+D+G    K +++A+  +KTIIWNG MGVFE+  FA G+ A+AK +AE    G  TIIGGGDS AA+ ++G  DKM+HISTGGGASLE L G+ L G+ A ++
Sbjct:  291 IKDGYMGMDIGPKTAKVYADAIKDSKTIIWNGPMGVFEFKNFAKGTFAVAKAMAE---SGAITIIGGGDSAAAINQLGFGDKMTHISTGGGASLEFLGGEELPGISALNN 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LEPIN (Phosphoglycerate kinase OS=Leptospira interrogans GN=pgk PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.511e-27
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  333 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 653
            I DGWMG+D+G   + ++ + +    TI WNG MGVFE  KFA+G+ AIAK +A+   K   T++GGGDS+AA+ K G+ADK++HISTGGGASLE +EG+ L GV A
Sbjct:  286 ILDGWMGMDIGSKTVSNYEKIIKNAGTIFWNGPMGVFEMDKFASGTMAIAKAVAKSKAK---TVVGGGDSIAAINKAGVADKITHISTGGGASLEFMEGRKLPGVEA 389          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOBA (Phosphoglycerate kinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pgk PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.511e-27
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP G MGLD+G    K +++A+   KT+IWNG MGVFE+  F  G+ A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK L G+ A +D
Sbjct:  290 IPAGTMGLDIGPKTEKLYADAVKDAKTVIWNGPMGVFEFENFNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CLOPS6.780e-2857.27Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOPE6.780e-2857.27Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CLOP16.780e-2857.27Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_CAEEL6.780e-2853.15Probable phosphoglycerate kinase OS=Caenorhabditis... [more]
PGK_ACHLI6.780e-2858.18Phosphoglycerate kinase OS=Acholeplasma laidlawii ... [more]
PGK_PELLD8.855e-2857.69Phosphoglycerate kinase OS=Pelodictyon luteolum (s... [more]
PGK_CLOK51.157e-2754.55Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_CLOK11.157e-2754.55Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_LEPIN1.511e-2754.21Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_CLOBA1.511e-2756.36Phosphoglycerate kinase OS=Clostridium botulinum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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