CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:3..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = -2
Query:  324 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 659
            TAIP+  +G+D+G    + +   + + +T++WNG MGVFE   FAAG+ A+A+ +AE + +G TTIIGGGDS AAV K GLA++M+HISTGGGASLE LEGK L G+ A +D
Sbjct:  286 TAIPEEMIGVDIGPLTAEIYRNEILSARTVLWNGPMGVFEIDNFAAGTMAVAQAMAEATAEGATTIIGGGDSAAAVAKAGLANEMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LACS1 (Phosphoglycerate kinase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDG+M LD+G  +++ F + L   KT++WNG MGVFE   FA G+  + K L  LS    TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGKTL G+ A  D
Sbjct:  292 IPDGYMALDIGPKSVELFEDTLKDAKTVVWNGPMGVFEMSNFAKGTLEVGKFLGTLSD--ATTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKTLPGIAAVSD 399          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LACCB (Phosphoglycerate kinase OS=Lactobacillus casei (strain BL23) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDG+M LD+G   IK F +AL   KT++WNG MGVFE   +A G+  + + L +L  K  TTIIGGGDS AA +++G+A K++HISTGGGASLE LEGKTL G+ A  D
Sbjct:  288 IPDGYMALDIGPKTIKEFKDALQGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDL--KDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISD 395          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LACC3 (Phosphoglycerate kinase OS=Lactobacillus casei (strain ATCC 334) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IPDG+M LD+G   IK F +AL   KT++WNG MGVFE   +A G+  + + L +L  K  TTIIGGGDS AA +++G+A K++HISTGGGASLE LEGKTL G+ A  D
Sbjct:  288 IPDGYMALDIGPKTIKEFKDALQGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDL--KDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISD 395          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            I +G+MGLD+G    K +S+ + + KT++WNG MGVFE+ KFA G+  +AK +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK L G+ A +D
Sbjct:  294 IKEGYMGLDIGPKTSKLYSQEVQSAKTVVWNGPMGVFEFEKFAKGTIEVAKAMAESQA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = -2
Query:  324 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 659
            T I DG  GLD+G   I+++++ +   KT++WNG MGVFE  +FA G+ A+A+ LA+ +  G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK L G+ A +D
Sbjct:  286 TTISDGMSGLDIGPATIETYAKEILGAKTVLWNGPMGVFEIDQFAKGTFAVAQALADATDAGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLPB (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP+  MGLD+G   I +FS  +   KT++WNG MGVFE   FA G+ AIA+ LA+ + KG  +I+GGGDS AAV K GLA  ++HISTGGGASLE LEGK L G+ A +D
Sbjct:  288 IPENMMGLDIGPKTIDTFSREILAAKTVVWNGPMGVFEIEPFAKGTIAIAQALADATAKGTISIVGGGDSAAAVMKAGLASGITHISTGGGASLEFLEGKELPGITALND 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = -2
Query:  324 ATAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 662
            A  IPDGW GLD G  +I+ F + +  +KTI+WNG  GVFE+  FA G++A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTL GV A  +
Sbjct:  303 AEGIPDGWQGLDCGPKSIEEFQKVIGESKTILWNGPPGVFEFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PORGI (Phosphoglycerate kinase OS=Porphyromonas gingivalis GN=pgk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  333 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 653
            IPD WMG+D+G  +I+ F + +  +KTI+WNG  GVFE+  F+ GS+A+ + + E +  G  +++GGGDSVA V K GLADK+S++STGGGA LE +EGKTL G+ A
Sbjct:  309 IPDDWMGMDIGPRSIEKFRKVILESKTILWNGPTGVFEFDNFSIGSKAVGEAIVEATANGAFSLVGGGDSVACVNKFGLADKVSYVSTGGGALLEAIEGKTLPGIAA 415          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 59/112 (52.68%), Postives = 83/112 (74.11%), Query Frame = -2
Query:  324 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 659
            +AI  G +GLD+G   I+++ + +   KT++WNG MGVFE  +FA G+ A+A+ LA+ + +G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK L G+ A +D
Sbjct:  286 SAISAGMIGLDIGPATIETYRKEILDAKTVLWNGPMGVFEIDQFARGTFAVAQALADATAEGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PELPB6.133e-2954.46Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_LACS16.133e-2956.36Phosphoglycerate kinase OS=Lactobacillus salivariu... [more]
PGK_LACCB6.133e-2956.36Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_LACC36.133e-2956.36Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_CLOTE6.133e-2956.36Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_CHLP88.009e-2953.57Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_CHLPB1.046e-2856.36Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_YARLI1.784e-2852.21Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_PORGI2.330e-2852.34Phosphoglycerate kinase OS=Porphyromonas gingivali... [more]
PGK_CHLTE2.330e-2852.68Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
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