CN189211

Overview
NameCN189211
Unique NameCN189211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:3..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            IP  W  LD+G +  K++++ +  +K ++WNG MGVFE   FA G+ A+A+ LAE +     ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK L GV A +D
Sbjct:  286 IPSDWEALDIGEETRKTYADVIKNSKLVVWNGPMGVFEIDAFAKGTRAVAEALAEAND--TYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVKALND 393          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CORJK (Phosphoglycerate kinase OS=Corynebacterium jeikeium (strain K411) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.044e-28
Identity = 57/107 (53.27%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  339 AIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLHGV 656
            +IP+GWMGLD+G +++K+F+E L  +KT+ WNG MGVFE+  FA G+  +A+ + + +  G  +++GGGDS AAV  +GL ++  SHISTGGGASLE LEGK L GV
Sbjct:  292 SIPEGWMGLDIGPESVKAFAEVLSKSKTVFWNGPMGVFEFPAFAEGTRGVAQAIIDATAAGAFSVVGGGDSAAAVRTLGLNEEGFSHISTGGGASLEFLEGKELPGV 398          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_RUBXD (Phosphoglycerate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            IP+GWMGLD+G   ++ F   +   +TI WNG MGVFE   FA G+E +A+ +AE    G T+++GGGDSVAAV K+GL D+MSHISTGGGASLE +EG+ L GV
Sbjct:  282 IPEGWMGLDIGPRTVELFRRHILQARTIFWNGPMGVFEIDAFARGTEGVARAVAE---SGATSVVGGGDSVAAVRKLGLEDRMSHISTGGGASLEYVEGRELPGV 383          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            I DGWMG+D+G   I ++ +A+   KTI+WNG MGVFE  KF+ G+  IAK +++   K   T++GGGDS+AAV K G+ADK++HISTGGGASLE LEG+TL GV
Sbjct:  286 IIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFSKGTIEIAKAISKSKAK---TVVGGGDSIAAVNKAGVADKITHISTGGGASLEFLEGRTLPGV 387          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LEPBA (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGV 653
            I DGWMG+D+G   I ++ +A+   KTI+WNG MGVFE  KF+ G+  IAK +++   K   T++GGGDS+AAV K G+ADK++HISTGGGASLE LEG+TL GV
Sbjct:  286 IIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFSKGTIEIAKAISKSKAK---TVVGGGDSIAAVNKAGVADKITHISTGGGASLEFLEGRTLPGV 387          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_LACBA (Phosphoglycerate kinase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  324 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 653
            +PDG+M LD+G  ++  F + L   KT++WNG MGVFE   +A G+  I K L  L+     TI+GGGDS AAV+++G+ADK+SHISTGGGASLE LEGKTL G+ A  D
Sbjct:  292 VPDGYMALDIGPKSVAEFKDVLKDAKTVVWNGPMGVFEMSNYAEGTLEIGKFLGTLTN--AKTIVGGGDSTAAVQQLGVADKLSHISTGGGASLEYLEGKTLPGIAAISD 399          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_TRIRE (Phosphoglycerate kinase OS=Trichoderma reesei GN=pgk1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = -2
Query:  333 TAIPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLA 659
            + IPDGWMGLD G  +I+ + EA+   KTI+WNG  GVFE+ KFA G++A    + E    G   IIGGGD+     K G+ DK+SH+STGGGASLELLEGK L GV+A
Sbjct:  304 SGIPDGWMGLDCGEKSIELYKEAIADAKTILWNGPAGVFEFDKFANGTKATLDAVVEGCKNGKIVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKELPGVVA 412          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CORDI (Phosphoglycerate kinase OS=Corynebacterium diphtheriae GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLHGV 653
            IP+GWM LDVG   ++ F+E L T+KT+ WNG MGVFE+  F+AG+  +A+ +   +  G  +++GGGDS AAV  +GL  D  SHISTGGGASLELLEGK L GV
Sbjct:  295 IPEGWMSLDVGPKTVEKFAEVLATSKTVFWNGPMGVFEFENFSAGTRGVAEAIIAATANGAFSVVGGGDSAAAVRLLGLDEDGFSHISTGGGASLELLEGKNLPGV 400          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_PROVI (Phosphoglycerate kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  324 GWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLHGVLAFDD 644
            G MGLD+G   I+++ + +   +TI+WNG MGVFE   FA G+ A+A+ +A  + KG TTIIGGGDS AAV K GLA KM+HISTGGGASLE LEGK L G+ A +D
Sbjct:  291 GEMGLDIGPLTIEAYRQEILGARTILWNGPMGVFEIDSFANGTFAVAEAMALATAKGATTIIGGGDSAAAVAKAGLASKMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN189211 vs. ExPASy Swiss-Prot
Match: PGK_CORU7 (Phosphoglycerate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = -2
Query:  339 IPDGWMGLDVGRDAIKSFSEALDTTKTIIWNGRMGVFEYHKFAAGSEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLHGV 653
            IP GWMGLD+G ++  +F+  L   KT+ WNG MGVFE+  FAAG++A+A+ + + +  G  +++GGGDS AAV  +GL +K  SHISTGGGASLE LEGKTL GV
Sbjct:  293 IPSGWMGLDIGPESADAFAAVLGEAKTVFWNGPMGVFEFPAFAAGTKAVAEAIIKATDAGAFSVVGGGDSAAAVRTLGLDEKGFSHISTGGGASLEFLEGKTLPGV 398          
The following BLAST results are available for this feature:
BLAST of CN189211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACLD2.330e-2855.45Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]
PGK_CORJK3.044e-2853.27Phosphoglycerate kinase OS=Corynebacterium jeikeiu... [more]
PGK_RUBXD3.975e-2857.14Phosphoglycerate kinase OS=Rubrobacter xylanophilu... [more]
PGK_LEPBP3.975e-2857.14Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_LEPBA3.975e-2857.14Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_LACBA3.975e-2854.55Phosphoglycerate kinase OS=Lactobacillus brevis (s... [more]
PGK_TRIRE5.192e-2855.05Phosphoglycerate kinase OS=Trichoderma reesei GN=p... [more]
PGK_CORDI5.192e-2855.66Phosphoglycerate kinase OS=Corynebacterium diphthe... [more]
PGK_PROVI6.780e-2857.94Phosphoglycerate kinase OS=Prosthecochloris vibrio... [more]
PGK_CORU76.780e-2855.66Phosphoglycerate kinase OS=Corynebacterium urealyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001H22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189211 ID=CN189211; Name=CN189211; organism=Citrus sinensis; type=EST; length=663bp
GCGGATGGAAATATTGTAGTGCCAGGATTCATGCATTATCTCCCAATCAT
CAACGGCTCATTGTGATCAGAAAGGAACAAGAACTTGACTTCTTGAAACT
TATAGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAAT
GCATCACCATTGATGCCTGTGAAAAAGAATTTATTTTTACTCTTACAGCA
TCTACAAAACCAACTCTCATGATAAAGTTTAACTTTTATCCACTCTGGGC
TGACAACCAGCCTCACATACAACTCTGGAAATGGCACATTTAAAAAAGGA
AAGTCCAAGAACTGGGTTTAAGCATCATCAAAAGCAAGCACACCATGGAG
TGTTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATAT
GGCTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCTACTGAATCA
CCTCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTT
CTTGGCAATTGCCTCACTGCCAGCAGCAAATTTATGATATTCAAACACAC
CCATACGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTG
AATGACTTGATGGCATCACGTCCAACATCCAAGCCCATCCAACCATCTGG
AATTGCCGTTGCT
back to top