CN189205

Overview
NameCN189205
Unique NameCN189205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2815 contig Csv1_Contig2815:3..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALDCA_DANRE (Fructose-bisphosphate aldolase C-A OS=Danio rerio GN=aldoca PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = -1
Query:  388 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEA 678
            +T L+R VPPAV G+ FLSGGQSE EA++NL+A+N      PW ++FS+ RALQ + LKTW+G+ EN  AA +  + RA+ NSLA  GKY+  G+S  A
Sbjct:  254 VTALRRTVPPAVTGVTFLSGGQSEEEASINLSAINNCRLVKPWALTFSFGRALQASALKTWRGQRENEAAATEEFIKRAEINSLASQGKYTVCGDSSGA 352          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALDOB_RAT (Fructose-bisphosphate aldolase B OS=Rattus norvegicus GN=Aldob PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  355 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAK-KGMFVRGYTY 678
            +T L R VP AVP I FLSGG SE +ATLNLNA+ + P   PW +SFSY RALQ + L  W G+  N +A Q++ + RA AN  A  G+Y   G S  A  + +F   YTY
Sbjct:  254 VTALHRTVPAAVPSICFLSGGMSEEDATLNLNAIYRCPLPRPWKLSFSYGRALQASALAAWGGKAANKKATQEAFMKRAVANCQAAQGQYVHTGSSGAASTQSLFTASYTY 364          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFA (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa GN=XF_0826 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  415 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQA-PNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 669
            LK  VP  +PGI+FLSGGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LGK+
Sbjct:  246 LKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQLDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFT (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1845 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  415 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 669
            LK  VP  +PGI+FLSGGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LGK+
Sbjct:  246 LKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQFDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF_LYMST (Fructose-bisphosphate aldolase (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = -1
Query:  487 LTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPE 678
            +T L R VP AV GI FLSGGQSE +AT+NLNA+NQ P   PW ++FSY RALQ +VLK W G+ E
Sbjct:   35 VTALNRTVPAAVAGITFLSGGQSEEDATINLNAINQFPGRKPWPLTFSYGRALQASVLKAWGGKDE 100          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF1_XANCP (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas campestris pv. campestris GN=XCC3185 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  415 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 669
            LK  VP  +PGI+FLSGGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LGK+
Sbjct:  246 LKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWSKDMTGNYAKAQQIIYERAKENGLAALGKW 332          
BLAST of CN189205 vs. ExPASy Swiss-Prot
Match: ALF1_XANAC (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas axonopodis pv. citri GN=XAC3344 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  415 LKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 669
            LK  VP  +PGI+FLSGGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LGK+
Sbjct:  246 LKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWAKDMTGNFAKAQQVIYERAKENGLAALGKW 332          
The following BLAST results are available for this feature:
BLAST of CN189205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ALDCA_DANRE1.708e-2152.53Fructose-bisphosphate aldolase C-A OS=Danio rerio ... [more]
ALDOB_RAT4.208e-2048.65Fructose-bisphosphate aldolase B OS=Rattus norvegi... [more]
ALF1_XYLFA2.822e-1652.87Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XYLFT3.686e-1652.87Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF_LYMST4.075e-1562.12Fructose-bisphosphate aldolase (Fragment) OS=Lymna... [more]
ALF1_XANCP1.549e-1449.43Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANAC1.549e-1449.43Probable fructose-bisphosphate aldolase class 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189205 ID=CN189205; Name=CN189205; organism=Citrus sinensis; type=EST; length=678bp
AGGATTTAAATATCAACTGGAGACATGAAAAAAGAAAAAAAAAAAAAAGT
AGAACTCATAATTTAGAGTACAGTAGCATAAAAACATAGAAATACAATGA
TTCTTGTTTAACTAGTACCCCTTTCGCTGGGCTACAGTTTGTAAAATCTT
TTCTTATCTCACAGGTTTTATTCAAGCTCTCTATTTATTAGGTGGATAAA
AGAAAATGAAAAAACTTCTAATAGAAATCTTGTCCGTATCCCAAAAAAAT
TTTAAAAAAAAGGGAAGGAACCAAAACAAAAGCAAGTGCACAATGACACA
AGTGTCATGAGTTGCCTCAGGCAAGCTCAAACTGCATAGTATATTATTGG
CTTAGTAAGTGTAGCCCCTGACAAACATTCCTTTCTTGGCTTCCTCGCTT
TCACCTTCTGCGGAATACTTCCCAAGCTGCGCCAAGGAATTTGCCTTTGC
ACGCACCAATAGTGACTTTTGTGCAGCTTCAGTATTCTCAGGACGACCTT
GCCATGTCTTAAGAACAGTGTTCTGAAGCGCCCGGGCATAAGAAAAGGAC
ACGTGCCAGGGGTTGGGGGCTTGGTTCATCGCATTCAAGTTCAATGTTGC
TTCCACTTCTGATTGTCCTCCAGACAAAAACATGATTCCTGGGACTGCAG
GGGGTACTCTCCTCTTGAGCATTGTAAG
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