CN189201

Overview
NameCN189201
Unique NameCN189201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  252 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGGNMQ 620
            N ++K+ GVEP+E + ++G  PG          + P ILD+ ++++VF+V + +A++MAR LAL+EG++VGIS GA  VAA+ L       GKL   +    G   ++  LF  + +E   M+
Sbjct:  291 NKDIKVVGVEPSERSVISGDNPG----------YLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLVGISSGAAAVAAVSLAKRAENAGKLITVLFPSHGERYITTALFSSINREVQEMR 403          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = -2
Query:  261 KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKEGG 560
            KPGPH I G G GF P+ LD+ ++++V  V +++A+  AR LA +EG++ GIS GA   AA+RL       GK  V V    G   LS  LF  +  E G
Sbjct:  226 KPGPHKIQGIGAGFIPENLDLSLVDQVERVSNEEAIAYARRLAQEEGLISGISCGAAVAAAVRLAQQSEHAGKTIVVVLPDSGERYLSTALFDGIFNEQG 325          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -2
Query:  285 NPNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLF 620
            +P   I+ VE  ES  L+G +PGPH I G   GF P+ LD    +++  V S DA++ AR    KEG +VGIS GA   AA+ +    G KGK  +T+    G   LS  L+
Sbjct:  195 SPETVIYAVEAEESAVLSGQEPGPHKIQGISAGFIPNTLDTKAYDQIIRVKSKDALETARLTGAKEGFLVGISSGAALYAAIEVAKQLG-KGKHVLTILPDNGERYLSTELY 305          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  276 NVKIFGVEPAES----NFLNGG--KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQEL 614
            N+    VEP+ES     FL G   +PGPH I G G GF P  LD+ ++++V  V S++A+  A+EL  KEG++ GIS GA   AA+++        K  V +    G   LS  LF EL
Sbjct:  197 NLISIAVEPSESPVITQFLAGKAIEPGPHKIQGIGPGFIPKNLDLTIIDQVITVSSEEAILTAKELMKKEGILAGISSGAALYAAIKIQQQKKFSDKKIVVILPSSGERYLSTELFSEL 315          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = -2
Query:  375 PNVKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAAL 617
            P++ +  VEPA S  L+GGKPG H + G   GF P IL+ DV +++ ++  +DA    R LA +EG++VG S GA   AA+
Sbjct:  199 PDITVHVVEPAGSPVLSGGKPGAHKLVGTSPGFIPPILNEDVYDEIIKISDEDAYTTTRRLAAEEGILVGPSSGAACFAAI 279          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = -2
Query:  282 VEPAESNFLNGG------KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQ 596
            VEP ES  ++        KPGPH I G G GF P  LD+ ++++V  V SD A+  AR L  +EG++ GIS GA   AA RL  +P    KL V +        LS  LF+
Sbjct:  202 VEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFE 312          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  348 VKIFGVEPAESNFLNGGKPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLV-SMPGKK 611
            V I GVEP  S  L+ G+ G H I G G  F P IL+ +V+++V  V ++DA+  A+ELA K G+MVGIS GAN  AA  L    P K+
Sbjct:  193 VHIVGVEPLNSPLLSKGEAGSHKIQGIGANFIPAILNKEVIDEVITVSNEDAINTAKELA-KSGLMVGISSGANVFAASMLAKKFPDKR 280          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  267 KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKE 560
            KPGPH I G G GF P  LD+ +++KV  + +++A+  AR L  +EG++ GIS GA   AAL+L        K  V +    G   LS  LF +L  E
Sbjct:  221 KPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTE 318          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  267 KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKE 560
            KPGPH I G G GF P  LD+ +++KV  + +++A+  AR L  +EG++ GIS GA   AAL+L        K  V +    G   LS  LF +L  E
Sbjct:  221 KPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTE 318          
BLAST of CN189201 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  267 KPGPHFITGKGVGFKPDILDMDVMEKVFEVCSDDAVKMARELALKEGVMVGISFGANTVAALRLVSMPGKKGKLFVTVHGGFGGGNLSFVLFQELRKE 560
            KPGPH I G G GF P  LD+ +++KV  + +++A+  AR L  +EG++ GIS GA   AAL+L        K  V +    G   LS  LF +L  E
Sbjct:  221 KPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTE 318          
The following BLAST results are available for this feature:
BLAST of CN189201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK4_ARATH1.528e-1535.77Probable cysteine synthase, chloroplastic OS=Arabi... [more]
SRPG_SYNE77.099e-1342.00Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_STRP69.271e-1340.18Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_BUCAI1.211e-1239.50Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
CYSM_BACSU2.697e-1243.21Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_HAEIN2.697e-1240.54Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSM_CAMJE6.009e-1247.19Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSK_SALTY2.982e-1139.80Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI2.982e-1139.80Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_ECOLI2.982e-1139.80Cysteine synthase A OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189201 ID=CN189201; Name=CN189201; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTTTTTTTTAAAATTCAAAATTCCAAGTATTTAAATTCAAAA
TTCCAAATACCCCAACTGCAAAAAATCATTTTCATTTTCATTTTTATTCT
TAAAAAAAACAAATTGAAACAATACCAAACGGGCCTAAACTATCTGAAGG
GATCAAATTTCATACAAATAAAGTTCAACAAGCAAATTTGATACAAGTTC
ACCTTTCTAAAAAACAACCCCCATATACAAGCATTATTCAACTGAAACTG
GTTGCATGTTCCCACCTTCTTTCCTGAGTTCTTGAAACAAAACAAATGAC
AAGTTTCCCCCCCCAAAGCCCCCATGAACAGTCACAAAAAGTTTGCCTTT
TTTCCCTGGCATGCTAACAAGTCTTAGGGCTGCCACTGTATTGGCCCCAA
ATGATATTCCAACCATAACCCCTTCCTTCAATGCCAGTTCCCTGGCCATT
TTTACTGCATCGTCACTACAAACCTCAAAAACCTTTTCCATCACATCCAT
GTCTAGAATATCGGGTTTGAACCCAACCCCCTTGCCAGTAATGAAATGAG
GACCTGGTTTGCCCCCATTCAAAAAATTACTTTCAGCCGGTTCCACCCCA
AAGATCTTAACATTAGGATTT
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