CN189198

Overview
NameCN189198
Unique NameCN189198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.193e-44
Identity = 80/105 (76.19%), Postives = 94/105 (89.52%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   64 LPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.193e-44
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   75 LPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.193e-44
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   75 LPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.193e-44
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   75 LPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.035e-44
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:    3 LPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.035e-44
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPLS EALLK+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   65 LPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.658e-44
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   75 LPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KPPG
Sbjct:   75 LPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:   73 LPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 78/104 (75.00%), Postives = 91/104 (87.50%), Query Frame = -3
Query:  234 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 545
            LP L+D  L KE++YLIR+ WIPC+EFELE G+VYREH  SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   73 LPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of CN189198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_HORVU1.193e-4476.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU1.193e-4475.24Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.193e-4475.24Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU1.193e-4475.24Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_WHEAT2.035e-4475.24Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_WHEAT2.035e-4475.24Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS2A_SOLLC2.658e-4476.19Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_AMAHP3.472e-4473.33Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOYBN3.472e-4474.29Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1A_ARATH3.472e-4475.00Ribulose bisphosphate carboxylase small chain 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189198 ID=CN189198; Name=CN189198; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTACTGAAAACAAGGATTCAATTATTAAAATATATATAAAAAAAAA
ACATAGAAGCCAAAGTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCA
ACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATCGAA
TGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATGGGT
GGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGGCTTGGCAGCAA
TGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATTCGG
ACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAAC
CTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCCAGT
AGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCACGGTACACCCAT
CCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGATAAG
GTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
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