CN189198

Overview
NameCN189198
Unique NameCN189198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 33/94 (35.11%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  264 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 545
            LP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   25 LPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = -3
Query:  228 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 545
            LPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q  + I  +   V
Sbjct:   25 LPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = -3
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ--CISFIAAKP 545
            LP L+DE ++K+I Y I   W   +E      W    H ++       YW +W LP++G  D   V+ E+   +K  P  +V++  FDN R V+  C+SFI  +P
Sbjct:   11 LPDLTDEQIVKQIQYAISKNWALNVE------WTDDPHPRNA------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103          
The following BLAST results are available for this feature:
BLAST of CN189198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_THIDA1.739e-1135.11Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS_RHOCA3.874e-1131.13Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_GUITH8.631e-1133.33Ribulose bisphosphate carboxylase small chain OS=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189198 ID=CN189198; Name=CN189198; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTACTGAAAACAAGGATTCAATTATTAAAATATATATAAAAAAAAA
ACATAGAAGCCAAAGTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCA
ACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATCGAA
TGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATGGGT
GGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGGCTTGGCAGCAA
TGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATTCGG
ACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAAC
CTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCCAGT
AGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCACGGTACACCCAT
CCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGATAAG
GTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
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