CN189198

Overview
NameCN189198
Unique NameCN189198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:276..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.013e-43
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:   77 LPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.013e-43
Identity = 76/104 (73.08%), Postives = 90/104 (86.54%), Query Frame = -3
Query:  234 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 545
            LP L+D  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:   73 LPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.548e-43
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = -3
Query:  234 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 545
            LPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:   77 LPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.552e-43
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:   77 LPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.905e-42
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = -3
Query:  237 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 545
            LPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP
Sbjct:   78 LPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.488e-42
Identity = 79/105 (75.24%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   65 LPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.488e-42
Identity = 79/105 (75.24%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   65 LPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.488e-42
Identity = 79/105 (75.24%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   65 LPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.250e-42
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LPPL++  L KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:   73 LPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CN189198 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.244e-42
Identity = 73/105 (69.52%), Postives = 92/105 (87.62%), Query Frame = -3
Query:  231 LPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 545
            LP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   68 LPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
The following BLAST results are available for this feature:
BLAST of CN189198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_MANES5.013e-4373.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1B_ARATH5.013e-4373.08Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_FAGCR6.548e-4375.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR8.552e-4372.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP1.905e-4272.82Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_ORYSJ2.488e-4275.24Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_ORYSJ2.488e-4275.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.488e-4275.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN3.250e-4268.57Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR4.244e-4269.52Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189198 ID=CN189198; Name=CN189198; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTACTGAAAACAAGGATTCAATTATTAAAATATATATAAAAAAAAA
ACATAGAAGCCAAAGTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCA
ACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATCGAA
TGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATGGGT
GGTTACACAAATTTAATTGGGAACCTAGACGCCTGGTGGCTTGGCAGCAA
TGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATTCGG
ACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAAC
CTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCCAGT
AGCGTCCATCGTAGTATCCTGGTGACTTGTGGTGCTCACGGTACACCCAT
CCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGATAAG
GTAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
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